Cluster: HRGMv2_1715_CGC20
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_1715
- CGC Family ID: CGCFAM_00700
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1715_26 | HRGMv2_1715_26_20 | 18740 | 19732 | - | GT2 |
| CAZyme | HRGMv2_1715_26 | HRGMv2_1715_26_21 | 19825 | 20943 | + | GT2 |
| pfam | HRGMv2_1715_26 | HRGMv2_1715_26_22 | 21038 | 21889 | - | Radical_SAM | Fer4_12 |
| pfam | HRGMv2_1715_26 | HRGMv2_1715_26_23 | 21913 | 24249 | - | Gly_radical | PFL-like |
| CAZyme | HRGMv2_1715_26 | HRGMv2_1715_26_24 | 24286 | 25350 | - | GT2 |
| NULL(UNKNOWN) | HRGMv2_1715_26 | HRGMv2_1715_26_25 | 25511 | 26296 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_1715_26 | HRGMv2_1715_26_26 | 26330 | 27235 | - | 2.A.119.2.2 |
| pfam | HRGMv2_1715_26 | HRGMv2_1715_26_27 | 27270 | 28067 | - | PseudoU_synth_1 |
| TC | HRGMv2_1715_26 | HRGMv2_1715_26_28 | 28142 | 28900 | - | 3.A.1.25.4 |
| TC | HRGMv2_1715_26 | HRGMv2_1715_26_29 | 28893 | 30464 | - | 3.A.1.26.1 |
Gene ID: HRGMv2_1715_26_20
Type: CAZyme
Location: 18740 - 19732 (-)
Type: CAZyme
Location: 18740 - 19732 (-)
Gene ID: HRGMv2_1715_26_21
Type: CAZyme
Location: 19825 - 20943 (+)
Type: CAZyme
Location: 19825 - 20943 (+)
Gene ID: HRGMv2_1715_26_22
Type: pfam
Location: 21038 - 21889 (-)
Type: pfam
Location: 21038 - 21889 (-)
Gene ID: HRGMv2_1715_26_23
Type: pfam
Location: 21913 - 24249 (-)
Type: pfam
Location: 21913 - 24249 (-)
Gene ID: HRGMv2_1715_26_24
Type: CAZyme
Location: 24286 - 25350 (-)
Type: CAZyme
Location: 24286 - 25350 (-)
Gene ID: HRGMv2_1715_26_25
Type:
Location: 25511 - 26296 (-)
Type:
Location: 25511 - 26296 (-)
Gene ID: HRGMv2_1715_26_26
Type: TC
Location: 26330 - 27235 (-)
Type: TC
Location: 26330 - 27235 (-)
Gene ID: HRGMv2_1715_26_27
Type: pfam
Location: 27270 - 28067 (-)
Type: pfam
Location: 27270 - 28067 (-)
Gene ID: HRGMv2_1715_26_28
Type: TC
Location: 28142 - 28900 (-)
Type: TC
Location: 28142 - 28900 (-)
Gene ID: HRGMv2_1715_26_29
Type: TC
Location: 28893 - 30464 (-)
Type: TC
Location: 28893 - 30464 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Atopobiaceae
Genus
Thermophilibacter
Species
Thermophilibacter provencensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.