Cluster: HRGMv2_1681_CGC17
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_1681
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1681_10 | HRGMv2_1681_10_24 | 23475 | 24644 | + | GT2 |
| CAZyme | HRGMv2_1681_10 | HRGMv2_1681_10_25 | 24654 | 25772 | + | GT2 |
| NULL(UNKNOWN) | HRGMv2_1681_10 | HRGMv2_1681_10_26 | 25898 | 26839 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | HRGMv2_1681_10 | HRGMv2_1681_10_27 | 26879 | 28159 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_1681_10 | HRGMv2_1681_10_28 | 28393 | 30072 | - | 3.A.1.120.6 |
Gene ID: HRGMv2_1681_10_24
Type: CAZyme
Location: 23475 - 24644 (+)
Type: CAZyme
Location: 23475 - 24644 (+)
Gene ID: HRGMv2_1681_10_25
Type: CAZyme
Location: 24654 - 25772 (+)
Type: CAZyme
Location: 24654 - 25772 (+)
Gene ID: HRGMv2_1681_10_26
Type:
Location: 25898 - 26839 (+)
Type:
Location: 25898 - 26839 (+)
Gene ID: HRGMv2_1681_10_27
Type:
Location: 26879 - 28159 (+)
Type:
Location: 26879 - 28159 (+)
Gene ID: HRGMv2_1681_10_28
Type: TC
Location: 28393 - 30072 (-)
Type: TC
Location: 28393 - 30072 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp003479805
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.