dbCAN Logo

Cluster: HRGMv2_1679_CGC28

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1679_3 HRGMv2_1679_3_141 188914 190068 - CE9
STP HRGMv2_1679_3 HRGMv2_1679_3_142 190184 191350 - SIS | SIS
TF HRGMv2_1679_3 HRGMv2_1679_3_143 191540 192271 - GntR
TC HRGMv2_1679_3 HRGMv2_1679_3_144 192409 193488 - 4.A.6.1.4
TC HRGMv2_1679_3 HRGMv2_1679_3_145 193478 194275 - 4.A.6.1.4
TC HRGMv2_1679_3 HRGMv2_1679_3_146 194362 194844 - 4.A.6.1.4
pfam HRGMv2_1679_3 HRGMv2_1679_3_147 194911 195195 - YajC
TC HRGMv2_1679_3 HRGMv2_1679_3_148 195195 195635 - 4.A.6.1.16
Gene ID: HRGMv2_1679_3_141
Type: CAZyme
Location: 188914 - 190068 (-)
Gene ID: HRGMv2_1679_3_142
Type: STP
Location: 190184 - 191350 (-)
Gene ID: HRGMv2_1679_3_143
Type: TF
Location: 191540 - 192271 (-)
Gene ID: HRGMv2_1679_3_144
Type: TC
Location: 192409 - 193488 (-)
Gene ID: HRGMv2_1679_3_145
Type: TC
Location: 193478 - 194275 (-)
Gene ID: HRGMv2_1679_3_146
Type: TC
Location: 194362 - 194844 (-)
Gene ID: HRGMv2_1679_3_147
Type: pfam
Location: 194911 - 195195 (-)
Gene ID: HRGMv2_1679_3_148
Type: TC
Location: 195195 - 195635 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1679_3_145 vegan > omnivore 1.10741 0.01548

🧭 Explore Read Mapping of CGC

← Back to Cluster List