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Cluster: HRGMv2_1679_CGC22

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1679_2 HRGMv2_1679_2_279 354676 356076 + GH1
TC HRGMv2_1679_2 HRGMv2_1679_2_280 356197 357564 + 4.A.3.2.9
TC HRGMv2_1679_2 HRGMv2_1679_2_281 357626 357931 + 4.A.3.2.8
TC HRGMv2_1679_2 HRGMv2_1679_2_282 357939 358277 + 4.A.3.1.2
peptidase HRGMv2_1679_2 HRGMv2_1679_2_283 358746 360872 + C69.UPW
pfam HRGMv2_1679_2 HRGMv2_1679_2_284 361076 362017 + DHH | DHHA2
TC HRGMv2_1679_2 HRGMv2_1679_2_285 362129 363481 + 2.A.33.1.2
TF HRGMv2_1679_2 HRGMv2_1679_2_286 363892 364839 - HTH_3
pfam HRGMv2_1679_2 HRGMv2_1679_2_287 365164 366624 - PK | PK_C
TC HRGMv2_1679_2 HRGMv2_1679_2_288 367260 369935 + 3.A.3.2.21
Gene ID: HRGMv2_1679_2_279
Type: CAZyme
Location: 354676 - 356076 (+)
Gene ID: HRGMv2_1679_2_280
Type: TC
Location: 356197 - 357564 (+)
Gene ID: HRGMv2_1679_2_281
Type: TC
Location: 357626 - 357931 (+)
Gene ID: HRGMv2_1679_2_282
Type: TC
Location: 357939 - 358277 (+)
Gene ID: HRGMv2_1679_2_283
Type: peptidase
Location: 358746 - 360872 (+)
Gene ID: HRGMv2_1679_2_284
Type: pfam
Location: 361076 - 362017 (+)
Gene ID: HRGMv2_1679_2_285
Type: TC
Location: 362129 - 363481 (+)
Gene ID: HRGMv2_1679_2_286
Type: TF
Location: 363892 - 364839 (-)
Gene ID: HRGMv2_1679_2_287
Type: pfam
Location: 365164 - 366624 (-)
Gene ID: HRGMv2_1679_2_288
Type: TC
Location: 367260 - 369935 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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