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Cluster: HRGMv2_1679_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1679_2 HRGMv2_1679_2_205 267967 268266 + 4.A.3.2.5
TC HRGMv2_1679_2 HRGMv2_1679_2_206 268259 268621 + 4.A.3.2.2
TC HRGMv2_1679_2 HRGMv2_1679_2_207 268705 270039 + 4.A.3.2.9
CAZyme HRGMv2_1679_2 HRGMv2_1679_2_208 270118 271536 + GH1
pfam HRGMv2_1679_2 HRGMv2_1679_2_209 272450 274216 - ILVD_EDD_N | ILV_EDD_C
TF HRGMv2_1679_2 HRGMv2_1679_2_210 274370 275077 + GntR
TC HRGMv2_1679_2 HRGMv2_1679_2_211 275390 277015 + 4.A.1.1.3
CAZyme HRGMv2_1679_2 HRGMv2_1679_2_212 277119 278459 + GH4
Gene ID: HRGMv2_1679_2_205
Type: TC
Location: 267967 - 268266 (+)
Gene ID: HRGMv2_1679_2_206
Type: TC
Location: 268259 - 268621 (+)
Gene ID: HRGMv2_1679_2_207
Type: TC
Location: 268705 - 270039 (+)
Gene ID: HRGMv2_1679_2_208
Type: CAZyme
Location: 270118 - 271536 (+)
Gene ID: HRGMv2_1679_2_209
Type: pfam
Location: 272450 - 274216 (-)
Gene ID: HRGMv2_1679_2_210
Type: TF
Location: 274370 - 275077 (+)
Gene ID: HRGMv2_1679_2_211
Type: TC
Location: 275390 - 277015 (+)
Gene ID: HRGMv2_1679_2_212
Type: CAZyme
Location: 277119 - 278459 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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