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Cluster: HRGMv2_1679_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1679_1 HRGMv2_1679_1_225 291415 292506 + GH1
TC HRGMv2_1679_1 HRGMv2_1679_1_226 292531 293853 + 4.A.3.2.8
TC HRGMv2_1679_1 HRGMv2_1679_1_227 293863 294162 + 4.A.3.2.6
TF HRGMv2_1679_1 HRGMv2_1679_1_228 294385 295377 + LacI
TC HRGMv2_1679_1 HRGMv2_1679_1_229 295529 296983 + 4.A.1.2.9
CAZyme HRGMv2_1679_1 HRGMv2_1679_1_230 297070 298608 + GH32
pfam HRGMv2_1679_1 HRGMv2_1679_1_231 298774 299853 + Cys_Met_Meta_PP
TC HRGMv2_1679_1 HRGMv2_1679_1_232 299942 300514 + 2.A.107.1.1
Gene ID: HRGMv2_1679_1_225
Type: CAZyme
Location: 291415 - 292506 (+)
Gene ID: HRGMv2_1679_1_226
Type: TC
Location: 292531 - 293853 (+)
Gene ID: HRGMv2_1679_1_227
Type: TC
Location: 293863 - 294162 (+)
Gene ID: HRGMv2_1679_1_228
Type: TF
Location: 294385 - 295377 (+)
Gene ID: HRGMv2_1679_1_229
Type: TC
Location: 295529 - 296983 (+)
Gene ID: HRGMv2_1679_1_230
Type: CAZyme
Location: 297070 - 298608 (+)
Gene ID: HRGMv2_1679_1_231
Type: pfam
Location: 298774 - 299853 (+)
Gene ID: HRGMv2_1679_1_232
Type: TC
Location: 299942 - 300514 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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