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Cluster: HRGMv2_1652_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1652_4 HRGMv2_1652_4_2 3153 4091 - 2.A.7.18.1
TF HRGMv2_1652_4 HRGMv2_1652_4_3 4094 5860 - 0040517
pfam HRGMv2_1652_4 HRGMv2_1652_4_4 6067 8154 + Lactamase_B | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_2 | Choline_bind_3 | Choline_bind_3 | Choline_bind_3 | Choline_bind_3
CAZyme HRGMv2_1652_4 HRGMv2_1652_4_5 8190 9311 + GT4
NULL(UNKNOWN) HRGMv2_1652_4 HRGMv2_1652_4_6 9657 10892 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_1652_4 HRGMv2_1652_4_7 10949 11830 - GT2
pfam HRGMv2_1652_4 HRGMv2_1652_4_8 12029 12886 + LicD
CAZyme HRGMv2_1652_4 HRGMv2_1652_4_9 12888 14036 + GT4
Gene ID: HRGMv2_1652_4_2
Type: TC
Location: 3153 - 4091 (-)
Gene ID: HRGMv2_1652_4_3
Type: TF
Location: 4094 - 5860 (-)
Gene ID: HRGMv2_1652_4_4
Type: pfam
Location: 6067 - 8154 (+)
Gene ID: HRGMv2_1652_4_5
Type: CAZyme
Location: 8190 - 9311 (+)
Gene ID: HRGMv2_1652_4_6
Type:
Location: 9657 - 10892 (-)
Gene ID: HRGMv2_1652_4_7
Type: CAZyme
Location: 10949 - 11830 (-)
Gene ID: HRGMv2_1652_4_8
Type: pfam
Location: 12029 - 12886 (+)
Gene ID: HRGMv2_1652_4_9
Type: CAZyme
Location: 12888 - 14036 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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