Cluster: HRGMv2_1650_CGC17
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate: alpha-glucan
- Genome ID: HRGMv2_1650
- CGC Family ID: CGCFAM_00160
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1650_51 | HRGMv2_1650_51_5 | 4523 | 6214 | - | GH13_29 |
| TC | HRGMv2_1650_51 | HRGMv2_1650_51_6 | 6281 | 8284 | - | 4.A.1.2.13 |
| TF | HRGMv2_1650_51 | HRGMv2_1650_51_7 | 8498 | 9220 | + | GntR |
| CAZyme | HRGMv2_1650_51 | HRGMv2_1650_51_8 | 9299 | 10156 | + | CE1 |
Gene ID: HRGMv2_1650_51_5
Type: CAZyme
Location: 4523 - 6214 (-)
Type: CAZyme
Location: 4523 - 6214 (-)
Gene ID: HRGMv2_1650_51_6
Type: TC
Location: 6281 - 8284 (-)
Type: TC
Location: 6281 - 8284 (-)
Gene ID: HRGMv2_1650_51_7
Type: TF
Location: 8498 - 9220 (+)
Type: TF
Location: 8498 - 9220 (+)
Gene ID: HRGMv2_1650_51_8
Type: CAZyme
Location: 9299 - 10156 (+)
Type: CAZyme
Location: 9299 - 10156 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Atopobiaceae
Genus
Thermophilibacter
Species
Thermophilibacter avistercoris
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.