Cluster: HRGMv2_1650_CGC16
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1650
- CGC Family ID: CGCFAM_09827
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1650_44 | HRGMv2_1650_44_1 | 2 | 475 | - | 3.A.1.144.3 |
| pfam | HRGMv2_1650_44 | HRGMv2_1650_44_2 | 858 | 3545 | - | tRNA-synt_1 | Anticodon_1 | tRNA-synt_1g | tRNA-synt_1g | Val_tRNA-synt_C |
| pfam | HRGMv2_1650_44 | HRGMv2_1650_44_3 | 3932 | 4696 | + | TatD_DNase |
| CAZyme | HRGMv2_1650_44 | HRGMv2_1650_44_4 | 4799 | 5923 | + | GT8 |
Gene ID: HRGMv2_1650_44_1
Type: TC
Location: 2 - 475 (-)
Type: TC
Location: 2 - 475 (-)
Gene ID: HRGMv2_1650_44_2
Type: pfam
Location: 858 - 3545 (-)
Type: pfam
Location: 858 - 3545 (-)
Gene ID: HRGMv2_1650_44_3
Type: pfam
Location: 3932 - 4696 (+)
Type: pfam
Location: 3932 - 4696 (+)
Gene ID: HRGMv2_1650_44_4
Type: CAZyme
Location: 4799 - 5923 (+)
Type: CAZyme
Location: 4799 - 5923 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Atopobiaceae
Genus
Thermophilibacter
Species
Thermophilibacter avistercoris
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1650_44_4 | vegetarian > vegan | 2.39899 | 0.01882 |