Cluster: HRGMv2_1650_CGC10
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1650
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1650_17 | HRGMv2_1650_17_1 | 2 | 706 | + | 3.A.1.135.1 |
| TC | HRGMv2_1650_17 | HRGMv2_1650_17_2 | 699 | 2627 | + | 3.A.1.135.5 |
| pfam | HRGMv2_1650_17 | HRGMv2_1650_17_3 | 2764 | 3354 | - | DUF308 | DUF308 | DUF308 |
| CAZyme | HRGMv2_1650_17 | HRGMv2_1650_17_4 | 3509 | 4738 | - | GH3 |
| pfam | HRGMv2_1650_17 | HRGMv2_1650_17_5 | 4745 | 5791 | - | Dala_Dala_lig_N | Dala_Dala_lig_C |
| pfam | HRGMv2_1650_17 | HRGMv2_1650_17_6 | 6234 | 6776 | - | ECF_trnsprt |
| TC | HRGMv2_1650_17 | HRGMv2_1650_17_7 | 6773 | 7498 | - | 3.A.1.25.4 |
| TC | HRGMv2_1650_17 | HRGMv2_1650_17_8 | 7495 | 8340 | - | 3.A.1.26.9 |
| TC | HRGMv2_1650_17 | HRGMv2_1650_17_9 | 8331 | 9155 | - | 3.A.1.28.2 |
| pfam | HRGMv2_1650_17 | HRGMv2_1650_17_10 | 9336 | 10133 | + | FAD_binding_5 |
| pfam | HRGMv2_1650_17 | HRGMv2_1650_17_11 | 10137 | 12917 | + | Fer2 | Ald_Xan_dh_C | Fer2_2 | MoCoBD_1 | MoCoBD_2 |
| TC | HRGMv2_1650_17 | HRGMv2_1650_17_12 | 13000 | 14730 | + | 3.A.1.135.5 |
| TC | HRGMv2_1650_17 | HRGMv2_1650_17_13 | 14727 | 16490 | + | 3.A.1.135.5 |
Gene ID: HRGMv2_1650_17_1
Type: TC
Location: 2 - 706 (+)
Type: TC
Location: 2 - 706 (+)
Gene ID: HRGMv2_1650_17_2
Type: TC
Location: 699 - 2627 (+)
Type: TC
Location: 699 - 2627 (+)
Gene ID: HRGMv2_1650_17_3
Type: pfam
Location: 2764 - 3354 (-)
Type: pfam
Location: 2764 - 3354 (-)
Gene ID: HRGMv2_1650_17_4
Type: CAZyme
Location: 3509 - 4738 (-)
Type: CAZyme
Location: 3509 - 4738 (-)
Gene ID: HRGMv2_1650_17_5
Type: pfam
Location: 4745 - 5791 (-)
Type: pfam
Location: 4745 - 5791 (-)
Gene ID: HRGMv2_1650_17_6
Type: pfam
Location: 6234 - 6776 (-)
Type: pfam
Location: 6234 - 6776 (-)
Gene ID: HRGMv2_1650_17_7
Type: TC
Location: 6773 - 7498 (-)
Type: TC
Location: 6773 - 7498 (-)
Gene ID: HRGMv2_1650_17_8
Type: TC
Location: 7495 - 8340 (-)
Type: TC
Location: 7495 - 8340 (-)
Gene ID: HRGMv2_1650_17_9
Type: TC
Location: 8331 - 9155 (-)
Type: TC
Location: 8331 - 9155 (-)
Gene ID: HRGMv2_1650_17_10
Type: pfam
Location: 9336 - 10133 (+)
Type: pfam
Location: 9336 - 10133 (+)
Gene ID: HRGMv2_1650_17_11
Type: pfam
Location: 10137 - 12917 (+)
Type: pfam
Location: 10137 - 12917 (+)
Gene ID: HRGMv2_1650_17_12
Type: TC
Location: 13000 - 14730 (+)
Type: TC
Location: 13000 - 14730 (+)
Gene ID: HRGMv2_1650_17_13
Type: TC
Location: 14727 - 16490 (+)
Type: TC
Location: 14727 - 16490 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Atopobiaceae
Genus
Thermophilibacter
Species
Thermophilibacter avistercoris
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.