Cluster: HRGMv2_1623_CGC8
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 5
- Substrate:
- Genome ID: HRGMv2_1623
- CGC Family ID: CGCFAM_00115
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1623_4 | HRGMv2_1623_4_133 | 144329 | 147082 | - | 3.A.3.5.15 |
| pfam | HRGMv2_1623_4 | HRGMv2_1623_4_134 | 147318 | 147668 | - | Trns_repr_metal |
| NULL(UNKNOWN) | HRGMv2_1623_4 | HRGMv2_1623_4_135 | 148145 | 148669 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_1623_4 | HRGMv2_1623_4_136 | 148687 | 150678 | + | CE4 |
| NULL(UNKNOWN) | HRGMv2_1623_4 | HRGMv2_1623_4_137 | 150803 | 151069 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_1623_4 | HRGMv2_1623_4_138 | 151286 | 151924 | - | 4.D.2.1.9 |
| CAZyme | HRGMv2_1623_4 | HRGMv2_1623_4_139 | 151924 | 152247 | - | GT2 |
| CAZyme | HRGMv2_1623_4 | HRGMv2_1623_4_140 | 152463 | 153746 | - | GT2 |
| pfam | HRGMv2_1623_4 | HRGMv2_1623_4_141 | 153797 | 155533 | - | Glucos_trans_II |
| CAZyme | HRGMv2_1623_4 | HRGMv2_1623_4_142 | 155942 | 157003 | + | GT2 |
| CAZyme | HRGMv2_1623_4 | HRGMv2_1623_4_143 | 157006 | 158094 | + | GT2 |
Gene ID: HRGMv2_1623_4_133
Type: TC
Location: 144329 - 147082 (-)
Type: TC
Location: 144329 - 147082 (-)
Gene ID: HRGMv2_1623_4_134
Type: pfam
Location: 147318 - 147668 (-)
Type: pfam
Location: 147318 - 147668 (-)
Gene ID: HRGMv2_1623_4_135
Type:
Location: 148145 - 148669 (+)
Type:
Location: 148145 - 148669 (+)
Gene ID: HRGMv2_1623_4_136
Type: CAZyme
Location: 148687 - 150678 (+)
Type: CAZyme
Location: 148687 - 150678 (+)
Gene ID: HRGMv2_1623_4_137
Type:
Location: 150803 - 151069 (-)
Type:
Location: 150803 - 151069 (-)
Gene ID: HRGMv2_1623_4_138
Type: TC
Location: 151286 - 151924 (-)
Type: TC
Location: 151286 - 151924 (-)
Gene ID: HRGMv2_1623_4_139
Type: CAZyme
Location: 151924 - 152247 (-)
Type: CAZyme
Location: 151924 - 152247 (-)
Gene ID: HRGMv2_1623_4_140
Type: CAZyme
Location: 152463 - 153746 (-)
Type: CAZyme
Location: 152463 - 153746 (-)
Gene ID: HRGMv2_1623_4_141
Type: pfam
Location: 153797 - 155533 (-)
Type: pfam
Location: 153797 - 155533 (-)
Gene ID: HRGMv2_1623_4_142
Type: CAZyme
Location: 155942 - 157003 (+)
Type: CAZyme
Location: 155942 - 157003 (+)
Gene ID: HRGMv2_1623_4_143
Type: CAZyme
Location: 157006 - 158094 (+)
Type: CAZyme
Location: 157006 - 158094 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Eggerthellaceae
Genus
Anaerotardibacter
Species
Anaerotardibacter sp000436075
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1623_4_134 | vegetarian > omnivore | 1.19773 | 0.00180 |
| HRGMv2_1623_4_134 | vegetarian > vegan | 1.86270 | 0.04492 |
| HRGMv2_1623_4_136 | vegetarian > omnivore | 1.18333 | 0.00180 |
| HRGMv2_1623_4_136 | vegetarian > vegan | 1.21242 | 0.04492 |
| HRGMv2_1623_4_138 | vegetarian > omnivore | 1.52871 | 0.00180 |
| HRGMv2_1623_4_142 | vegetarian > omnivore | 1.35653 | 0.00180 |