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Cluster: HRGMv2_1623_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1623_2 HRGMv2_1623_2_302 353853 355100 + GT28
STP HRGMv2_1623_2 HRGMv2_1623_2_303 355222 355482 - HMA
TC HRGMv2_1623_2 HRGMv2_1623_2_304 355571 357400 - 3.A.1.106.3
TC HRGMv2_1623_2 HRGMv2_1623_2_305 357641 358300 + 3.A.1.3.2
TC HRGMv2_1623_2 HRGMv2_1623_2_306 358281 358955 + 3.A.1.3.25
TC HRGMv2_1623_2 HRGMv2_1623_2_307 358959 359723 + 3.A.1.3.8
TC HRGMv2_1623_2 HRGMv2_1623_2_308 360435 361295 + 3.A.1.3.27
Gene ID: HRGMv2_1623_2_302
Type: CAZyme
Location: 353853 - 355100 (+)
Gene ID: HRGMv2_1623_2_303
Type: STP
Location: 355222 - 355482 (-)
Gene ID: HRGMv2_1623_2_304
Type: TC
Location: 355571 - 357400 (-)
Gene ID: HRGMv2_1623_2_305
Type: TC
Location: 357641 - 358300 (+)
Gene ID: HRGMv2_1623_2_306
Type: TC
Location: 358281 - 358955 (+)
Gene ID: HRGMv2_1623_2_307
Type: TC
Location: 358959 - 359723 (+)
Gene ID: HRGMv2_1623_2_308
Type: TC
Location: 360435 - 361295 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1623_2_308 vegetarian > vegan 1.09456 0.04492

🧭 Explore Read Mapping of CGC

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