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Cluster: HRGMv2_1557_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1557_7 HRGMv2_1557_7_8 7064 8233 - CE9
STP HRGMv2_1557_7 HRGMv2_1557_7_9 8351 9517 - SIS | SIS
TF HRGMv2_1557_7 HRGMv2_1557_7_10 9632 10363 - GntR
TC HRGMv2_1557_7 HRGMv2_1557_7_11 10549 11631 - 4.A.6.1.4
TC HRGMv2_1557_7 HRGMv2_1557_7_12 11621 12421 - 4.A.6.1.4
TC HRGMv2_1557_7 HRGMv2_1557_7_13 12512 12994 - 4.A.6.1.4
pfam HRGMv2_1557_7 HRGMv2_1557_7_14 13031 13312 - YajC
TC HRGMv2_1557_7 HRGMv2_1557_7_15 13312 13755 - 4.A.6.1.16
Gene ID: HRGMv2_1557_7_8
Type: CAZyme
Location: 7064 - 8233 (-)
Gene ID: HRGMv2_1557_7_9
Type: STP
Location: 8351 - 9517 (-)
Gene ID: HRGMv2_1557_7_10
Type: TF
Location: 9632 - 10363 (-)
Gene ID: HRGMv2_1557_7_11
Type: TC
Location: 10549 - 11631 (-)
Gene ID: HRGMv2_1557_7_12
Type: TC
Location: 11621 - 12421 (-)
Gene ID: HRGMv2_1557_7_13
Type: TC
Location: 12512 - 12994 (-)
Gene ID: HRGMv2_1557_7_14
Type: pfam
Location: 13031 - 13312 (-)
Gene ID: HRGMv2_1557_7_15
Type: TC
Location: 13312 - 13755 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1557_7_14 vegan > omnivore 1.03862 0.00701

🧭 Explore Read Mapping of CGC

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