Cluster: HRGMv2_1557_CGC5
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_1557
- CGC Family ID: CGCFAM_00003
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1557_3 | HRGMv2_1557_3_1 | 109 | 1062 | - | GT81 |
| pfam | HRGMv2_1557_3 | HRGMv2_1557_3_2 | 1285 | 3114 | + | DUF6020 |
| TC | HRGMv2_1557_3 | HRGMv2_1557_3_3 | 3107 | 4138 | + | 9.B.97.6.2 |
| NULL(UNKNOWN) | HRGMv2_1557_3 | HRGMv2_1557_3_4 | 4157 | 6301 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_1557_3 | HRGMv2_1557_3_5 | 6368 | 7387 | + | 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NAD_binding_4 | NAD_binding_10 | GDP_Man_Dehyd |
| CAZyme | HRGMv2_1557_3 | HRGMv2_1557_3_6 | 7653 | 8723 | + | GT2 |
| CAZyme | HRGMv2_1557_3 | HRGMv2_1557_3_7 | 8742 | 9962 | + | GT2 |
Gene ID: HRGMv2_1557_3_1
Type: CAZyme
Location: 109 - 1062 (-)
Type: CAZyme
Location: 109 - 1062 (-)
Gene ID: HRGMv2_1557_3_2
Type: pfam
Location: 1285 - 3114 (+)
Type: pfam
Location: 1285 - 3114 (+)
Gene ID: HRGMv2_1557_3_3
Type: TC
Location: 3107 - 4138 (+)
Type: TC
Location: 3107 - 4138 (+)
Gene ID: HRGMv2_1557_3_4
Type:
Location: 4157 - 6301 (+)
Type:
Location: 4157 - 6301 (+)
Gene ID: HRGMv2_1557_3_5
Type: pfam
Location: 6368 - 7387 (+)
Type: pfam
Location: 6368 - 7387 (+)
Gene ID: HRGMv2_1557_3_6
Type: CAZyme
Location: 7653 - 8723 (+)
Type: CAZyme
Location: 7653 - 8723 (+)
Gene ID: HRGMv2_1557_3_7
Type: CAZyme
Location: 8742 - 9962 (+)
Type: CAZyme
Location: 8742 - 9962 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900543275
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.