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Cluster: HRGMv2_1557_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1557_2 HRGMv2_1557_2_62 82482 83864 - GH4
TC HRGMv2_1557_2 HRGMv2_1557_2_63 83868 85484 - 4.A.1.1.3
pfam HRGMv2_1557_2 HRGMv2_1557_2_64 85584 86438 - PRD | PRD | CAT_RBD
TC HRGMv2_1557_2 HRGMv2_1557_2_65 86457 86969 - 4.A.1.2.5
STP HRGMv2_1557_2 HRGMv2_1557_2_66 87313 88074 - Fer4
TC HRGMv2_1557_2 HRGMv2_1557_2_67 88693 90942 - 1.I.1.1.3
STP HRGMv2_1557_2 HRGMv2_1557_2_68 91523 92485 + FHA
STP HRGMv2_1557_2 HRGMv2_1557_2_69 92657 94741 + Pkinase
TC HRGMv2_1557_2 HRGMv2_1557_2_70 95071 97410 + 3.A.3.5.15
Gene ID: HRGMv2_1557_2_62
Type: CAZyme
Location: 82482 - 83864 (-)
Gene ID: HRGMv2_1557_2_63
Type: TC
Location: 83868 - 85484 (-)
Gene ID: HRGMv2_1557_2_64
Type: pfam
Location: 85584 - 86438 (-)
Gene ID: HRGMv2_1557_2_65
Type: TC
Location: 86457 - 86969 (-)
Gene ID: HRGMv2_1557_2_66
Type: STP
Location: 87313 - 88074 (-)
Gene ID: HRGMv2_1557_2_67
Type: TC
Location: 88693 - 90942 (-)
Gene ID: HRGMv2_1557_2_68
Type: STP
Location: 91523 - 92485 (+)
Gene ID: HRGMv2_1557_2_69
Type: STP
Location: 92657 - 94741 (+)
Gene ID: HRGMv2_1557_2_70
Type: TC
Location: 95071 - 97410 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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