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Cluster: HRGMv2_1557_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1557_32 HRGMv2_1557_32_11 10695 11033 - 4.A.3.1.2
TF HRGMv2_1557_32 HRGMv2_1557_32_12 11248 12252 - LacI
TC HRGMv2_1557_32 HRGMv2_1557_32_13 12610 14376 + 4.A.3.1.1
CAZyme HRGMv2_1557_32 HRGMv2_1557_32_14 14443 15882 + GH1
TF HRGMv2_1557_32 HRGMv2_1557_32_15 16162 17172 - LacI
TC HRGMv2_1557_32 HRGMv2_1557_32_16 17448 19226 + 4.A.3.1.1
CAZyme HRGMv2_1557_32 HRGMv2_1557_32_17 19302 20723 + GH1
Gene ID: HRGMv2_1557_32_11
Type: TC
Location: 10695 - 11033 (-)
Gene ID: HRGMv2_1557_32_12
Type: TF
Location: 11248 - 12252 (-)
Gene ID: HRGMv2_1557_32_13
Type: TC
Location: 12610 - 14376 (+)
Gene ID: HRGMv2_1557_32_14
Type: CAZyme
Location: 14443 - 15882 (+)
Gene ID: HRGMv2_1557_32_15
Type: TF
Location: 16162 - 17172 (-)
Gene ID: HRGMv2_1557_32_16
Type: TC
Location: 17448 - 19226 (+)
Gene ID: HRGMv2_1557_32_17
Type: CAZyme
Location: 19302 - 20723 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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