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Cluster: HRGMv2_1557_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1557_19 HRGMv2_1557_19_11 14984 17434 - 4.A.1.1.8
TF HRGMv2_1557_19 HRGMv2_1557_19_12 17664 18383 + GntR
TC HRGMv2_1557_19 HRGMv2_1557_19_13 18690 20006 + 3.A.1.1.45
TC HRGMv2_1557_19 HRGMv2_1557_19_14 20094 20948 + 3.A.1.1.45
TC HRGMv2_1557_19 HRGMv2_1557_19_15 20948 21787 + 3.A.1.1.45
TC HRGMv2_1557_19 HRGMv2_1557_19_16 21856 23055 + 3.A.1.1.22
CAZyme HRGMv2_1557_19 HRGMv2_1557_19_17 23513 25780 - GT35
CAZyme HRGMv2_1557_19 HRGMv2_1557_19_18 25910 27415 - GH77
Gene ID: HRGMv2_1557_19_11
Type: TC
Location: 14984 - 17434 (-)
Gene ID: HRGMv2_1557_19_12
Type: TF
Location: 17664 - 18383 (+)
Gene ID: HRGMv2_1557_19_13
Type: TC
Location: 18690 - 20006 (+)
Gene ID: HRGMv2_1557_19_14
Type: TC
Location: 20094 - 20948 (+)
Gene ID: HRGMv2_1557_19_15
Type: TC
Location: 20948 - 21787 (+)
Gene ID: HRGMv2_1557_19_16
Type: TC
Location: 21856 - 23055 (+)
Gene ID: HRGMv2_1557_19_17
Type: CAZyme
Location: 23513 - 25780 (-)
Gene ID: HRGMv2_1557_19_18
Type: CAZyme
Location: 25910 - 27415 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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