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Cluster: HRGMv2_1557_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1557_9 HRGMv2_1557_9_26 26207 28975 + 3.A.3.4.1
TF HRGMv2_1557_9 HRGMv2_1557_9_27 29075 30619 - GerE
CAZyme HRGMv2_1557_9 HRGMv2_1557_9_28 31018 32331 - GH140
TC HRGMv2_1557_9 HRGMv2_1557_9_29 32541 33968 - 4.A.1.2.11
peptidase HRGMv2_1557_9 HRGMv2_1557_9_30 34459 35796 + S09.UPW
pfam HRGMv2_1557_9 HRGMv2_1557_9_31 35876 37387 + Sde182_NH-like
CAZyme HRGMv2_1557_9 HRGMv2_1557_9_32 37675 39105 - GH1
Gene ID: HRGMv2_1557_9_26
Type: TC
Location: 26207 - 28975 (+)
Gene ID: HRGMv2_1557_9_27
Type: TF
Location: 29075 - 30619 (-)
Gene ID: HRGMv2_1557_9_28
Type: CAZyme
Location: 31018 - 32331 (-)
Gene ID: HRGMv2_1557_9_29
Type: TC
Location: 32541 - 33968 (-)
Gene ID: HRGMv2_1557_9_30
Type: peptidase
Location: 34459 - 35796 (+)
Gene ID: HRGMv2_1557_9_31
Type: pfam
Location: 35876 - 37387 (+)
Gene ID: HRGMv2_1557_9_32
Type: CAZyme
Location: 37675 - 39105 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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