Cluster: HRGMv2_1557_CGC1
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1557
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1557_1 | HRGMv2_1557_1_32 | 34349 | 35722 | - | GH13_20 |
| TC | HRGMv2_1557_1 | HRGMv2_1557_1_33 | 36045 | 37229 | - | 2.A.1.2.18 |
| TC | HRGMv2_1557_1 | HRGMv2_1557_1_34 | 37354 | 39714 | - | 9.A.8.1.6 |
| NULL(UNKNOWN) | HRGMv2_1557_1 | HRGMv2_1557_1_35 | 39836 | 40156 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| peptidase | HRGMv2_1557_1 | HRGMv2_1557_1_36 | 40204 | 41103 | - | S09.UPW |
| TC | HRGMv2_1557_1 | HRGMv2_1557_1_37 | 41350 | 41913 | + | 4.A.1.2.6 |
| pfam | HRGMv2_1557_1 | HRGMv2_1557_1_38 | 42095 | 43498 | + | tRNA-synt_2 | tRNA_anti-codon |
| NULL(UNKNOWN) | HRGMv2_1557_1 | HRGMv2_1557_1_39 | 43748 | 44533 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_1557_1 | HRGMv2_1557_1_40 | 44694 | 45674 | + | 3.A.1.34.1 |
| TC | HRGMv2_1557_1 | HRGMv2_1557_1_41 | 45879 | 46802 | + | 3.A.1.34.1 |
| TC | HRGMv2_1557_1 | HRGMv2_1557_1_42 | 46795 | 47589 | + | 3.A.1.34.1 |
| TC | HRGMv2_1557_1 | HRGMv2_1557_1_43 | 47925 | 48692 | + | 1.A.23.4.2 |
Gene ID: HRGMv2_1557_1_32
Type: CAZyme
Location: 34349 - 35722 (-)
Type: CAZyme
Location: 34349 - 35722 (-)
Gene ID: HRGMv2_1557_1_33
Type: TC
Location: 36045 - 37229 (-)
Type: TC
Location: 36045 - 37229 (-)
Gene ID: HRGMv2_1557_1_34
Type: TC
Location: 37354 - 39714 (-)
Type: TC
Location: 37354 - 39714 (-)
Gene ID: HRGMv2_1557_1_35
Type:
Location: 39836 - 40156 (-)
Type:
Location: 39836 - 40156 (-)
Gene ID: HRGMv2_1557_1_36
Type: peptidase
Location: 40204 - 41103 (-)
Type: peptidase
Location: 40204 - 41103 (-)
Gene ID: HRGMv2_1557_1_37
Type: TC
Location: 41350 - 41913 (+)
Type: TC
Location: 41350 - 41913 (+)
Gene ID: HRGMv2_1557_1_38
Type: pfam
Location: 42095 - 43498 (+)
Type: pfam
Location: 42095 - 43498 (+)
Gene ID: HRGMv2_1557_1_39
Type:
Location: 43748 - 44533 (+)
Type:
Location: 43748 - 44533 (+)
Gene ID: HRGMv2_1557_1_40
Type: TC
Location: 44694 - 45674 (+)
Type: TC
Location: 44694 - 45674 (+)
Gene ID: HRGMv2_1557_1_41
Type: TC
Location: 45879 - 46802 (+)
Type: TC
Location: 45879 - 46802 (+)
Gene ID: HRGMv2_1557_1_42
Type: TC
Location: 46795 - 47589 (+)
Type: TC
Location: 46795 - 47589 (+)
Gene ID: HRGMv2_1557_1_43
Type: TC
Location: 47925 - 48692 (+)
Type: TC
Location: 47925 - 48692 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900543275
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.