Cluster: HRGMv2_1548_CGC5
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1548
- CGC Family ID: CGCFAM_00019
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1548_4 | HRGMv2_1548_4_9 | 9599 | 10975 | - | 3.A.1.17.10 |
| NULL(UNKNOWN) | HRGMv2_1548_4 | HRGMv2_1548_4_10 | 10979 | 12037 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_1548_4 | HRGMv2_1548_4_11 | 12040 | 13851 | - | 3.D.1.5.1 |
| STP | HRGMv2_1548_4 | HRGMv2_1548_4_12 | 13845 | 15677 | - | Pyr_redox_2 |
| CAZyme | HRGMv2_1548_4 | HRGMv2_1548_4_13 | 15934 | 17316 | - | GH4 |
| TC | HRGMv2_1548_4 | HRGMv2_1548_4_14 | 17320 | 18936 | - | 4.A.1.1.3 |
| pfam | HRGMv2_1548_4 | HRGMv2_1548_4_15 | 19036 | 19890 | - | PRD | PRD | CAT_RBD |
| TC | HRGMv2_1548_4 | HRGMv2_1548_4_16 | 19909 | 20421 | - | 4.A.1.2.5 |
| STP | HRGMv2_1548_4 | HRGMv2_1548_4_17 | 20823 | 21584 | - | Fer4 | Fer4 |
| TC | HRGMv2_1548_4 | HRGMv2_1548_4_18 | 22203 | 24482 | - | 1.I.1.1.3 |
| STP | HRGMv2_1548_4 | HRGMv2_1548_4_19 | 25229 | 26110 | + | FHA |
| STP | HRGMv2_1548_4 | HRGMv2_1548_4_20 | 26280 | 28364 | + | Pkinase |
| TC | HRGMv2_1548_4 | HRGMv2_1548_4_21 | 28837 | 31176 | + | 3.A.3.5.15 |
Gene ID: HRGMv2_1548_4_9
Type: TC
Location: 9599 - 10975 (-)
Type: TC
Location: 9599 - 10975 (-)
Gene ID: HRGMv2_1548_4_10
Type:
Location: 10979 - 12037 (-)
Type:
Location: 10979 - 12037 (-)
Gene ID: HRGMv2_1548_4_11
Type: TC
Location: 12040 - 13851 (-)
Type: TC
Location: 12040 - 13851 (-)
Gene ID: HRGMv2_1548_4_12
Type: STP
Location: 13845 - 15677 (-)
Type: STP
Location: 13845 - 15677 (-)
Gene ID: HRGMv2_1548_4_13
Type: CAZyme
Location: 15934 - 17316 (-)
Type: CAZyme
Location: 15934 - 17316 (-)
Gene ID: HRGMv2_1548_4_14
Type: TC
Location: 17320 - 18936 (-)
Type: TC
Location: 17320 - 18936 (-)
Gene ID: HRGMv2_1548_4_15
Type: pfam
Location: 19036 - 19890 (-)
Type: pfam
Location: 19036 - 19890 (-)
Gene ID: HRGMv2_1548_4_16
Type: TC
Location: 19909 - 20421 (-)
Type: TC
Location: 19909 - 20421 (-)
Gene ID: HRGMv2_1548_4_17
Type: STP
Location: 20823 - 21584 (-)
Type: STP
Location: 20823 - 21584 (-)
Gene ID: HRGMv2_1548_4_18
Type: TC
Location: 22203 - 24482 (-)
Type: TC
Location: 22203 - 24482 (-)
Gene ID: HRGMv2_1548_4_19
Type: STP
Location: 25229 - 26110 (+)
Type: STP
Location: 25229 - 26110 (+)
Gene ID: HRGMv2_1548_4_20
Type: STP
Location: 26280 - 28364 (+)
Type: STP
Location: 26280 - 28364 (+)
Gene ID: HRGMv2_1548_4_21
Type: TC
Location: 28837 - 31176 (+)
Type: TC
Location: 28837 - 31176 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.