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Cluster: HRGMv2_1542_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1542_34 HRGMv2_1542_34_2 1719 3992 + 1.I.1.1.3
STP HRGMv2_1542_34 HRGMv2_1542_34_3 4611 5372 + Fer4
TC HRGMv2_1542_34 HRGMv2_1542_34_4 5716 6228 + 4.A.1.2.5
pfam HRGMv2_1542_34 HRGMv2_1542_34_5 6235 7101 + PRD | PRD | CAT_RBD
TC HRGMv2_1542_34 HRGMv2_1542_34_6 7201 8817 + 4.A.1.1.3
CAZyme HRGMv2_1542_34 HRGMv2_1542_34_7 8821 10203 + GH4
STP HRGMv2_1542_34 HRGMv2_1542_34_8 10461 12293 + Pyr_redox_2
TC HRGMv2_1542_34 HRGMv2_1542_34_9 12287 14098 + 3.D.1.5.1
NULL(UNKNOWN) HRGMv2_1542_34 HRGMv2_1542_34_10 14101 15156 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_1542_34 HRGMv2_1542_34_11 15160 16536 + 3.A.1.17.10
Gene ID: HRGMv2_1542_34_2
Type: TC
Location: 1719 - 3992 (+)
Gene ID: HRGMv2_1542_34_3
Type: STP
Location: 4611 - 5372 (+)
Gene ID: HRGMv2_1542_34_4
Type: TC
Location: 5716 - 6228 (+)
Gene ID: HRGMv2_1542_34_5
Type: pfam
Location: 6235 - 7101 (+)
Gene ID: HRGMv2_1542_34_6
Type: TC
Location: 7201 - 8817 (+)
Gene ID: HRGMv2_1542_34_7
Type: CAZyme
Location: 8821 - 10203 (+)
Gene ID: HRGMv2_1542_34_8
Type: STP
Location: 10461 - 12293 (+)
Gene ID: HRGMv2_1542_34_9
Type: TC
Location: 12287 - 14098 (+)
Gene ID: HRGMv2_1542_34_10
Type:
Location: 14101 - 15156 (+)
Gene ID: HRGMv2_1542_34_11
Type: TC
Location: 15160 - 16536 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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