Cluster: HRGMv2_1540_CGC11
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1540
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1540_33 | HRGMv2_1540_33_1 | 2 | 1372 | - | 9.A.8.1.6 |
| TC | HRGMv2_1540_33 | HRGMv2_1540_33_2 | 1496 | 1717 | - | 9.A.8.1.6 |
| STP | HRGMv2_1540_33 | HRGMv2_1540_33_3 | 1757 | 1999 | - | FeoA |
| STP | HRGMv2_1540_33 | HRGMv2_1540_33_4 | 2189 | 2437 | - | PTS-HPr |
| TC | HRGMv2_1540_33 | HRGMv2_1540_33_5 | 2859 | 4322 | - | 2.A.3.7.4 |
| NULL(UNKNOWN) | HRGMv2_1540_33 | HRGMv2_1540_33_6 | 4476 | 4931 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_1540_33 | HRGMv2_1540_33_7 | 4935 | 7943 | - | GH2 |
Gene ID: HRGMv2_1540_33_1
Type: TC
Location: 2 - 1372 (-)
Type: TC
Location: 2 - 1372 (-)
Gene ID: HRGMv2_1540_33_2
Type: TC
Location: 1496 - 1717 (-)
Type: TC
Location: 1496 - 1717 (-)
Gene ID: HRGMv2_1540_33_3
Type: STP
Location: 1757 - 1999 (-)
Type: STP
Location: 1757 - 1999 (-)
Gene ID: HRGMv2_1540_33_4
Type: STP
Location: 2189 - 2437 (-)
Type: STP
Location: 2189 - 2437 (-)
Gene ID: HRGMv2_1540_33_5
Type: TC
Location: 2859 - 4322 (-)
Type: TC
Location: 2859 - 4322 (-)
Gene ID: HRGMv2_1540_33_6
Type:
Location: 4476 - 4931 (-)
Type:
Location: 4476 - 4931 (-)
Gene ID: HRGMv2_1540_33_7
Type: CAZyme
Location: 4935 - 7943 (-)
Type: CAZyme
Location: 4935 - 7943 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.