Cluster: HRGMv2_1539_CGC5
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 5
- Substrate:
- Genome ID: HRGMv2_1539
- CGC Family ID: CGCFAM_01160
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1539_11 | HRGMv2_1539_11_3 | 915 | 2045 | - | GH154 |
| CAZyme | HRGMv2_1539_11 | HRGMv2_1539_11_4 | 2048 | 3271 | - | GH28 |
| NULL(UNKNOWN) | HRGMv2_1539_11 | HRGMv2_1539_11_5 | 3385 | 4176 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_1539_11 | HRGMv2_1539_11_6 | 4187 | 5818 | - | CBM91 | GH43_11 |
| pfam | HRGMv2_1539_11 | HRGMv2_1539_11_7 | 5822 | 6664 | - | Hydrolase | S6PP | Hydrolase_3 |
| CAZyme | HRGMv2_1539_11 | HRGMv2_1539_11_8 | 6658 | 7809 | - | GH88 |
| NULL(UNKNOWN) | HRGMv2_1539_11 | HRGMv2_1539_11_9 | 7790 | 8434 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_1539_11 | HRGMv2_1539_11_10 | 8512 | 9393 | - | 4.A.6.1.19 |
| TC | HRGMv2_1539_11 | HRGMv2_1539_11_11 | 9386 | 10255 | - | 4.A.6.1.15 |
| TC | HRGMv2_1539_11 | HRGMv2_1539_11_12 | 10326 | 10808 | - | 4.A.6.1.11 |
| pfam | HRGMv2_1539_11 | HRGMv2_1539_11_13 | 10852 | 11283 | - | EIIA-man |
| CAZyme | HRGMv2_1539_11 | HRGMv2_1539_11_14 | 11437 | 13245 | - | GH154 |
Gene ID: HRGMv2_1539_11_3
Type: CAZyme
Location: 915 - 2045 (-)
Type: CAZyme
Location: 915 - 2045 (-)
Gene ID: HRGMv2_1539_11_4
Type: CAZyme
Location: 2048 - 3271 (-)
Type: CAZyme
Location: 2048 - 3271 (-)
Gene ID: HRGMv2_1539_11_5
Type:
Location: 3385 - 4176 (-)
Type:
Location: 3385 - 4176 (-)
Gene ID: HRGMv2_1539_11_6
Type: CAZyme
Location: 4187 - 5818 (-)
Type: CAZyme
Location: 4187 - 5818 (-)
Gene ID: HRGMv2_1539_11_7
Type: pfam
Location: 5822 - 6664 (-)
Type: pfam
Location: 5822 - 6664 (-)
Gene ID: HRGMv2_1539_11_8
Type: CAZyme
Location: 6658 - 7809 (-)
Type: CAZyme
Location: 6658 - 7809 (-)
Gene ID: HRGMv2_1539_11_9
Type:
Location: 7790 - 8434 (-)
Type:
Location: 7790 - 8434 (-)
Gene ID: HRGMv2_1539_11_10
Type: TC
Location: 8512 - 9393 (-)
Type: TC
Location: 8512 - 9393 (-)
Gene ID: HRGMv2_1539_11_11
Type: TC
Location: 9386 - 10255 (-)
Type: TC
Location: 9386 - 10255 (-)
Gene ID: HRGMv2_1539_11_12
Type: TC
Location: 10326 - 10808 (-)
Type: TC
Location: 10326 - 10808 (-)
Gene ID: HRGMv2_1539_11_13
Type: pfam
Location: 10852 - 11283 (-)
Type: pfam
Location: 10852 - 11283 (-)
Gene ID: HRGMv2_1539_11_14
Type: CAZyme
Location: 11437 - 13245 (-)
Type: CAZyme
Location: 11437 - 13245 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.