Cluster: HRGMv2_1538_CGC14
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 5
- Substrate:
- Genome ID: HRGMv2_1538
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1538_23 | HRGMv2_1538_23_9 | 9316 | 11124 | + | GH154 |
| pfam | HRGMv2_1538_23 | HRGMv2_1538_23_10 | 11279 | 11710 | + | EIIA-man |
| TC | HRGMv2_1538_23 | HRGMv2_1538_23_11 | 11755 | 12243 | + | 4.A.6.1.3 |
| TC | HRGMv2_1538_23 | HRGMv2_1538_23_12 | 12323 | 13219 | + | 4.A.6.1.22 |
| TC | HRGMv2_1538_23 | HRGMv2_1538_23_13 | 13212 | 14075 | + | 4.A.6.1.19 |
| NULL(UNKNOWN) | HRGMv2_1538_23 | HRGMv2_1538_23_14 | 14154 | 14807 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_1538_23 | HRGMv2_1538_23_15 | 14761 | 15939 | + | GH88 |
| pfam | HRGMv2_1538_23 | HRGMv2_1538_23_16 | 16133 | 16891 | + | CN_hydrolase |
| CAZyme | HRGMv2_1538_23 | HRGMv2_1538_23_17 | 16888 | 18519 | + | CBM91 | GH43_11 |
| NULL(UNKNOWN) | HRGMv2_1538_23 | HRGMv2_1538_23_18 | 18530 | 19330 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_1538_23 | HRGMv2_1538_23_19 | 19438 | 20661 | + | GH28 |
| CAZyme | HRGMv2_1538_23 | HRGMv2_1538_23_20 | 20664 | 22376 | + | GH154 |
Gene ID: HRGMv2_1538_23_9
Type: CAZyme
Location: 9316 - 11124 (+)
Type: CAZyme
Location: 9316 - 11124 (+)
Gene ID: HRGMv2_1538_23_10
Type: pfam
Location: 11279 - 11710 (+)
Type: pfam
Location: 11279 - 11710 (+)
Gene ID: HRGMv2_1538_23_11
Type: TC
Location: 11755 - 12243 (+)
Type: TC
Location: 11755 - 12243 (+)
Gene ID: HRGMv2_1538_23_12
Type: TC
Location: 12323 - 13219 (+)
Type: TC
Location: 12323 - 13219 (+)
Gene ID: HRGMv2_1538_23_13
Type: TC
Location: 13212 - 14075 (+)
Type: TC
Location: 13212 - 14075 (+)
Gene ID: HRGMv2_1538_23_14
Type:
Location: 14154 - 14807 (+)
Type:
Location: 14154 - 14807 (+)
Gene ID: HRGMv2_1538_23_15
Type: CAZyme
Location: 14761 - 15939 (+)
Type: CAZyme
Location: 14761 - 15939 (+)
Gene ID: HRGMv2_1538_23_16
Type: pfam
Location: 16133 - 16891 (+)
Type: pfam
Location: 16133 - 16891 (+)
Gene ID: HRGMv2_1538_23_17
Type: CAZyme
Location: 16888 - 18519 (+)
Type: CAZyme
Location: 16888 - 18519 (+)
Gene ID: HRGMv2_1538_23_18
Type:
Location: 18530 - 19330 (+)
Type:
Location: 18530 - 19330 (+)
Gene ID: HRGMv2_1538_23_19
Type: CAZyme
Location: 19438 - 20661 (+)
Type: CAZyme
Location: 19438 - 20661 (+)
Gene ID: HRGMv2_1538_23_20
Type: CAZyme
Location: 20664 - 22376 (+)
Type: CAZyme
Location: 20664 - 22376 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.