Cluster: HRGMv2_1535_CGC6
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 6
- Substrate:
- Genome ID: HRGMv2_1535
- CGC Family ID: CGCFAM_01159
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1535_6 | HRGMv2_1535_6_29 | 36550 | 37911 | - | 2.A.8.1.8 |
| TF | HRGMv2_1535_6 | HRGMv2_1535_6_30 | 38145 | 38831 | + | GntR |
| CAZyme | HRGMv2_1535_6 | HRGMv2_1535_6_31 | 38853 | 40565 | - | GH154 |
| CAZyme | HRGMv2_1535_6 | HRGMv2_1535_6_32 | 40568 | 41791 | - | GH28 |
| CAZyme | HRGMv2_1535_6 | HRGMv2_1535_6_33 | 41809 | 42741 | - | GH43_24 |
| NULL(UNKNOWN) | HRGMv2_1535_6 | HRGMv2_1535_6_34 | 42741 | 43553 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_1535_6 | HRGMv2_1535_6_35 | 43564 | 45195 | - | CBM91 | GH43_11 |
| pfam | HRGMv2_1535_6 | HRGMv2_1535_6_36 | 45192 | 46049 | - | CN_hydrolase |
| CAZyme | HRGMv2_1535_6 | HRGMv2_1535_6_37 | 46144 | 47322 | - | GH88 |
| NULL(UNKNOWN) | HRGMv2_1535_6 | HRGMv2_1535_6_38 | 47276 | 47929 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_1535_6 | HRGMv2_1535_6_39 | 48008 | 48871 | - | 4.A.6.1.19 |
| TC | HRGMv2_1535_6 | HRGMv2_1535_6_40 | 48864 | 49760 | - | 4.A.6.1.22 |
| TC | HRGMv2_1535_6 | HRGMv2_1535_6_41 | 49840 | 50328 | - | 4.A.6.1.3 |
| pfam | HRGMv2_1535_6 | HRGMv2_1535_6_42 | 50373 | 50804 | - | EIIA-man |
| CAZyme | HRGMv2_1535_6 | HRGMv2_1535_6_43 | 50959 | 52767 | - | GH154 |
Gene ID: HRGMv2_1535_6_29
Type: TC
Location: 36550 - 37911 (-)
Type: TC
Location: 36550 - 37911 (-)
Gene ID: HRGMv2_1535_6_30
Type: TF
Location: 38145 - 38831 (+)
Type: TF
Location: 38145 - 38831 (+)
Gene ID: HRGMv2_1535_6_31
Type: CAZyme
Location: 38853 - 40565 (-)
Type: CAZyme
Location: 38853 - 40565 (-)
Gene ID: HRGMv2_1535_6_32
Type: CAZyme
Location: 40568 - 41791 (-)
Type: CAZyme
Location: 40568 - 41791 (-)
Gene ID: HRGMv2_1535_6_33
Type: CAZyme
Location: 41809 - 42741 (-)
Type: CAZyme
Location: 41809 - 42741 (-)
Gene ID: HRGMv2_1535_6_34
Type:
Location: 42741 - 43553 (-)
Type:
Location: 42741 - 43553 (-)
Gene ID: HRGMv2_1535_6_35
Type: CAZyme
Location: 43564 - 45195 (-)
Type: CAZyme
Location: 43564 - 45195 (-)
Gene ID: HRGMv2_1535_6_36
Type: pfam
Location: 45192 - 46049 (-)
Type: pfam
Location: 45192 - 46049 (-)
Gene ID: HRGMv2_1535_6_37
Type: CAZyme
Location: 46144 - 47322 (-)
Type: CAZyme
Location: 46144 - 47322 (-)
Gene ID: HRGMv2_1535_6_38
Type:
Location: 47276 - 47929 (-)
Type:
Location: 47276 - 47929 (-)
Gene ID: HRGMv2_1535_6_39
Type: TC
Location: 48008 - 48871 (-)
Type: TC
Location: 48008 - 48871 (-)
Gene ID: HRGMv2_1535_6_40
Type: TC
Location: 48864 - 49760 (-)
Type: TC
Location: 48864 - 49760 (-)
Gene ID: HRGMv2_1535_6_41
Type: TC
Location: 49840 - 50328 (-)
Type: TC
Location: 49840 - 50328 (-)
Gene ID: HRGMv2_1535_6_42
Type: pfam
Location: 50373 - 50804 (-)
Type: pfam
Location: 50373 - 50804 (-)
Gene ID: HRGMv2_1535_6_43
Type: CAZyme
Location: 50959 - 52767 (-)
Type: CAZyme
Location: 50959 - 52767 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.