dbCAN Logo

Cluster: HRGMv2_1522_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1522_10 HRGMv2_1522_10_10 11230 12606 - 3.A.1.125.5
NULL(UNKNOWN) HRGMv2_1522_10 HRGMv2_1522_10_11 12610 13644 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_1522_10 HRGMv2_1522_10_12 13647 15458 - 3.D.1.5.1
STP HRGMv2_1522_10 HRGMv2_1522_10_13 15452 17284 - Pyr_redox_2
CAZyme HRGMv2_1522_10 HRGMv2_1522_10_14 17541 18923 - GH4
TC HRGMv2_1522_10 HRGMv2_1522_10_15 18927 20543 - 4.A.1.1.3
pfam HRGMv2_1522_10 HRGMv2_1522_10_16 20643 21509 - PRD | PRD | CAT_RBD
TC HRGMv2_1522_10 HRGMv2_1522_10_17 21516 22028 - 4.A.1.2.5
STP HRGMv2_1522_10 HRGMv2_1522_10_18 22309 23070 - Fer4
TC HRGMv2_1522_10 HRGMv2_1522_10_19 23689 25917 - 1.I.1.1.3
Gene ID: HRGMv2_1522_10_10
Type: TC
Location: 11230 - 12606 (-)
Gene ID: HRGMv2_1522_10_11
Type:
Location: 12610 - 13644 (-)
Gene ID: HRGMv2_1522_10_12
Type: TC
Location: 13647 - 15458 (-)
Gene ID: HRGMv2_1522_10_13
Type: STP
Location: 15452 - 17284 (-)
Gene ID: HRGMv2_1522_10_14
Type: CAZyme
Location: 17541 - 18923 (-)
Gene ID: HRGMv2_1522_10_15
Type: TC
Location: 18927 - 20543 (-)
Gene ID: HRGMv2_1522_10_16
Type: pfam
Location: 20643 - 21509 (-)
Gene ID: HRGMv2_1522_10_17
Type: TC
Location: 21516 - 22028 (-)
Gene ID: HRGMv2_1522_10_18
Type: STP
Location: 22309 - 23070 (-)
Gene ID: HRGMv2_1522_10_19
Type: TC
Location: 23689 - 25917 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1522_10_10 vegan > omnivore 1.10187 0.02258
HRGMv2_1522_10_11 vegan > omnivore 1.00205 0.02258

🧭 Explore Read Mapping of CGC

← Back to Cluster List