Cluster: HRGMv2_1515_CGC9
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 9
- Substrate:
- Genome ID: HRGMv2_1515
- CGC Family ID: CGCFAM_01608
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1515_3 | HRGMv2_1515_3_77 | 102080 | 103210 | + | GT2 |
| CAZyme | HRGMv2_1515_3 | HRGMv2_1515_3_78 | 103237 | 104460 | + | GT4 |
| pfam | HRGMv2_1515_3 | HRGMv2_1515_3_79 | 104479 | 105426 | + | 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NAD_binding_4 | GDP_Man_Dehyd |
| CAZyme | HRGMv2_1515_3 | HRGMv2_1515_3_80 | 105532 | 108930 | + | CBM13 | CBM13 | CBM13 | CBM13 | CBM13 |
| CAZyme | HRGMv2_1515_3 | HRGMv2_1515_3_81 | 109339 | 112692 | + | CBM13 | CBM13 | CBM13 | CBM13 | CBM13 | CBM13 |
| CAZyme | HRGMv2_1515_3 | HRGMv2_1515_3_82 | 112764 | 116279 | + | CBM13 | CBM13 | CBM13 | CBM13 |
| CAZyme | HRGMv2_1515_3 | HRGMv2_1515_3_83 | 116580 | 121559 | + | CBM13 | CBM13 | CBM13 | CBM13 | CBM13 | CBM13 | GH25 |
| TC | HRGMv2_1515_3 | HRGMv2_1515_3_84 | 121584 | 122615 | + | 9.B.97.1.2 |
| pfam | HRGMv2_1515_3 | HRGMv2_1515_3_85 | 122938 | 124500 | + | DUF6020 |
| CAZyme | HRGMv2_1515_3 | HRGMv2_1515_3_86 | 124517 | 125446 | + | GT81 |
| CAZyme | HRGMv2_1515_3 | HRGMv2_1515_3_87 | 125544 | 128555 | + | GT111 | GT2 | GT8 |
| TC | HRGMv2_1515_3 | HRGMv2_1515_3_88 | 128709 | 129554 | + | 3.A.1.103.6 |
| TC | HRGMv2_1515_3 | HRGMv2_1515_3_89 | 129564 | 130352 | + | 3.A.1.103.1 |
| pfam | HRGMv2_1515_3 | HRGMv2_1515_3_90 | 130664 | 132409 | + | CW_binding_2 | CW_binding_2 | CW_binding_2 |
| CAZyme | HRGMv2_1515_3 | HRGMv2_1515_3_91 | 132545 | 136915 | - | CBM13 | CBM13 |
Gene ID: HRGMv2_1515_3_77
Type: CAZyme
Location: 102080 - 103210 (+)
Type: CAZyme
Location: 102080 - 103210 (+)
Gene ID: HRGMv2_1515_3_78
Type: CAZyme
Location: 103237 - 104460 (+)
Type: CAZyme
Location: 103237 - 104460 (+)
Gene ID: HRGMv2_1515_3_79
Type: pfam
Location: 104479 - 105426 (+)
Type: pfam
Location: 104479 - 105426 (+)
Gene ID: HRGMv2_1515_3_80
Type: CAZyme
Location: 105532 - 108930 (+)
Type: CAZyme
Location: 105532 - 108930 (+)
Gene ID: HRGMv2_1515_3_81
Type: CAZyme
Location: 109339 - 112692 (+)
Type: CAZyme
Location: 109339 - 112692 (+)
Gene ID: HRGMv2_1515_3_82
Type: CAZyme
Location: 112764 - 116279 (+)
Type: CAZyme
Location: 112764 - 116279 (+)
Gene ID: HRGMv2_1515_3_83
Type: CAZyme
Location: 116580 - 121559 (+)
Type: CAZyme
Location: 116580 - 121559 (+)
Gene ID: HRGMv2_1515_3_84
Type: TC
Location: 121584 - 122615 (+)
Type: TC
Location: 121584 - 122615 (+)
Gene ID: HRGMv2_1515_3_85
Type: pfam
Location: 122938 - 124500 (+)
Type: pfam
Location: 122938 - 124500 (+)
Gene ID: HRGMv2_1515_3_86
Type: CAZyme
Location: 124517 - 125446 (+)
Type: CAZyme
Location: 124517 - 125446 (+)
Gene ID: HRGMv2_1515_3_87
Type: CAZyme
Location: 125544 - 128555 (+)
Type: CAZyme
Location: 125544 - 128555 (+)
Gene ID: HRGMv2_1515_3_88
Type: TC
Location: 128709 - 129554 (+)
Type: TC
Location: 128709 - 129554 (+)
Gene ID: HRGMv2_1515_3_89
Type: TC
Location: 129564 - 130352 (+)
Type: TC
Location: 129564 - 130352 (+)
Gene ID: HRGMv2_1515_3_90
Type: pfam
Location: 130664 - 132409 (+)
Type: pfam
Location: 130664 - 132409 (+)
Gene ID: HRGMv2_1515_3_91
Type: CAZyme
Location: 132545 - 136915 (-)
Type: CAZyme
Location: 132545 - 136915 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.