Cluster: HRGMv2_1515_CGC7

🧬 Cluster Details

Gene Type	Contig ID	Protein ID	Start	Stop	Direction	Protein Family
TC	HRGMv2_1515_2	HRGMv2_1515_2_57	60628	62109	+	3.A.1.8.1
TC	HRGMv2_1515_2	HRGMv2_1515_2_58	62113	63183	+	3.A.1.1.3
pfam	HRGMv2_1515_2	HRGMv2_1515_2_59	63634	64917	+	HGD-D
TC	HRGMv2_1515_2	HRGMv2_1515_2_60	65101	66711	+	3.A.1.5.11
TC	HRGMv2_1515_2	HRGMv2_1515_2_61	66798	67751	+	3.A.1.5.11
TC	HRGMv2_1515_2	HRGMv2_1515_2_62	67751	68578	+	3.A.1.5.39
TC	HRGMv2_1515_2	HRGMv2_1515_2_63	68582	69580	+	3.A.1.5.35
TC	HRGMv2_1515_2	HRGMv2_1515_2_64	69567	70352	+	3.A.1.5.36
pfam	HRGMv2_1515_2	HRGMv2_1515_2_65	70430	71593	+	HGD-D
pfam	HRGMv2_1515_2	HRGMv2_1515_2_66	71645	72409	+	BcrAD_BadFG
CAZyme	HRGMv2_1515_2	HRGMv2_1515_2_67	72423	73667	+	GT4

Gene ID: HRGMv2_1515_2_57
Type: TC
Location: 60628 - 62109 (+)

Gene ID: HRGMv2_1515_2_58
Type: TC
Location: 62113 - 63183 (+)

Gene ID: HRGMv2_1515_2_59
Type: pfam
Location: 63634 - 64917 (+)

Gene ID: HRGMv2_1515_2_60
Type: TC
Location: 65101 - 66711 (+)

Gene ID: HRGMv2_1515_2_61
Type: TC
Location: 66798 - 67751 (+)

Gene ID: HRGMv2_1515_2_62
Type: TC
Location: 67751 - 68578 (+)

Gene ID: HRGMv2_1515_2_63
Type: TC
Location: 68582 - 69580 (+)

Gene ID: HRGMv2_1515_2_64
Type: TC
Location: 69567 - 70352 (+)

Gene ID: HRGMv2_1515_2_65
Type: pfam
Location: 70430 - 71593 (+)

Gene ID: HRGMv2_1515_2_66
Type: pfam
Location: 71645 - 72409 (+)

Gene ID: HRGMv2_1515_2_67
Type: CAZyme
Location: 72423 - 73667 (+)

Taxonomic Lineage

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Gene Level Read Mapping

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Gene ID	Condition Pair	log2FC	FDR P-value
HRGMv2_1515_2_60	vegan > omnivore	3.24018	0.00566
HRGMv2_1515_2_61	vegan > omnivore	2.58086	0.00566
HRGMv2_1515_2_62	vegan > omnivore	2.79836	0.00566
HRGMv2_1515_2_63	vegan > omnivore	1.36413	0.00566
HRGMv2_1515_2_64	vegan > omnivore	2.44692	0.00566