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Cluster: HRGMv2_1515_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1515_1 HRGMv2_1515_1_273 312241 313410 - CE9
STP HRGMv2_1515_1 HRGMv2_1515_1_274 313528 314694 - SIS | SIS
TF HRGMv2_1515_1 HRGMv2_1515_1_275 314809 315540 - GntR
TC HRGMv2_1515_1 HRGMv2_1515_1_276 315726 316808 - 4.A.6.1.4
TC HRGMv2_1515_1 HRGMv2_1515_1_277 316798 317598 - 4.A.6.1.4
TC HRGMv2_1515_1 HRGMv2_1515_1_278 317689 318171 - 4.A.6.1.4
pfam HRGMv2_1515_1 HRGMv2_1515_1_279 318208 318489 - YajC
TC HRGMv2_1515_1 HRGMv2_1515_1_280 318489 318932 - 4.A.6.1.16
Gene ID: HRGMv2_1515_1_273
Type: CAZyme
Location: 312241 - 313410 (-)
Gene ID: HRGMv2_1515_1_274
Type: STP
Location: 313528 - 314694 (-)
Gene ID: HRGMv2_1515_1_275
Type: TF
Location: 314809 - 315540 (-)
Gene ID: HRGMv2_1515_1_276
Type: TC
Location: 315726 - 316808 (-)
Gene ID: HRGMv2_1515_1_277
Type: TC
Location: 316798 - 317598 (-)
Gene ID: HRGMv2_1515_1_278
Type: TC
Location: 317689 - 318171 (-)
Gene ID: HRGMv2_1515_1_279
Type: pfam
Location: 318208 - 318489 (-)
Gene ID: HRGMv2_1515_1_280
Type: TC
Location: 318489 - 318932 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1515_1_279 vegan > omnivore 1.07339 0.00566

🧭 Explore Read Mapping of CGC

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