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Cluster: HRGMv2_1515_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1515_1 HRGMv2_1515_1_101 105283 106659 - GH13_20
TC HRGMv2_1515_1 HRGMv2_1515_1_102 106813 108009 - 2.A.1.2.18
TC HRGMv2_1515_1 HRGMv2_1515_1_103 108131 110491 - 9.A.8.1.6
pfam HRGMv2_1515_1 HRGMv2_1515_1_104 111004 112185 + Zn_Ribbon_1
peptidase HRGMv2_1515_1 HRGMv2_1515_1_105 112610 113509 - S09.UPW
TC HRGMv2_1515_1 HRGMv2_1515_1_106 113678 114319 + 4.A.1.2.6
TC HRGMv2_1515_1 HRGMv2_1515_1_107 114554 116488 + 9.B.97.5.1
pfam HRGMv2_1515_1 HRGMv2_1515_1_108 116625 118028 + tRNA-synt_2 | tRNA_anti-codon
NULL(UNKNOWN) HRGMv2_1515_1 HRGMv2_1515_1_109 118277 119065 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_1515_1 HRGMv2_1515_1_110 119225 120205 + 3.A.1.34.1
TC HRGMv2_1515_1 HRGMv2_1515_1_111 120410 121333 + 3.A.1.34.1
TC HRGMv2_1515_1 HRGMv2_1515_1_112 121326 122120 + 3.A.1.34.1
TC HRGMv2_1515_1 HRGMv2_1515_1_113 122270 123037 + 1.A.23.4.2
pfam HRGMv2_1515_1 HRGMv2_1515_1_114 123132 125048 + Bmp
pfam HRGMv2_1515_1 HRGMv2_1515_1_115 125045 125755 + Metallophos | Metallophos_2
TC HRGMv2_1515_1 HRGMv2_1515_1_116 126043 126750 - 1.C.82.1.1
Gene ID: HRGMv2_1515_1_101
Type: CAZyme
Location: 105283 - 106659 (-)
Gene ID: HRGMv2_1515_1_102
Type: TC
Location: 106813 - 108009 (-)
Gene ID: HRGMv2_1515_1_103
Type: TC
Location: 108131 - 110491 (-)
Gene ID: HRGMv2_1515_1_104
Type: pfam
Location: 111004 - 112185 (+)
Gene ID: HRGMv2_1515_1_105
Type: peptidase
Location: 112610 - 113509 (-)
Gene ID: HRGMv2_1515_1_106
Type: TC
Location: 113678 - 114319 (+)
Gene ID: HRGMv2_1515_1_107
Type: TC
Location: 114554 - 116488 (+)
Gene ID: HRGMv2_1515_1_108
Type: pfam
Location: 116625 - 118028 (+)
Gene ID: HRGMv2_1515_1_109
Type:
Location: 118277 - 119065 (+)
Gene ID: HRGMv2_1515_1_110
Type: TC
Location: 119225 - 120205 (+)
Gene ID: HRGMv2_1515_1_111
Type: TC
Location: 120410 - 121333 (+)
Gene ID: HRGMv2_1515_1_112
Type: TC
Location: 121326 - 122120 (+)
Gene ID: HRGMv2_1515_1_113
Type: TC
Location: 122270 - 123037 (+)
Gene ID: HRGMv2_1515_1_114
Type: pfam
Location: 123132 - 125048 (+)
Gene ID: HRGMv2_1515_1_115
Type: pfam
Location: 125045 - 125755 (+)
Gene ID: HRGMv2_1515_1_116
Type: TC
Location: 126043 - 126750 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1515_1_104 vegetarian > vegan 15.94448 0.00365
HRGMv2_1515_1_107 vegan > omnivore 1.33672 0.00566
HRGMv2_1515_1_107 vegetarian > omnivore 1.43903 0.00920

🧭 Explore Read Mapping of CGC

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