Cluster: HRGMv2_1504_CGC6
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 5
- Substrate:
- Genome ID: HRGMv2_1504
- CGC Family ID: CGCFAM_01160
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1504_5 | HRGMv2_1504_5_49 | 58966 | 60327 | - | 2.A.8.1.8 |
| TF | HRGMv2_1504_5 | HRGMv2_1504_5_50 | 60561 | 61247 | + | GntR |
| CAZyme | HRGMv2_1504_5 | HRGMv2_1504_5_51 | 61272 | 62981 | - | GH154 |
| CAZyme | HRGMv2_1504_5 | HRGMv2_1504_5_52 | 62984 | 64207 | - | GH28 |
| pfam | HRGMv2_1504_5 | HRGMv2_1504_5_53 | 64323 | 65114 | - | DUF7402 |
| CAZyme | HRGMv2_1504_5 | HRGMv2_1504_5_54 | 65127 | 66758 | - | CBM91 | GH43_11 |
| pfam | HRGMv2_1504_5 | HRGMv2_1504_5_55 | 66762 | 67604 | - | Hydrolase | S6PP | Hydrolase_3 |
| CAZyme | HRGMv2_1504_5 | HRGMv2_1504_5_56 | 67598 | 68749 | - | GH88 |
| NULL(UNKNOWN) | HRGMv2_1504_5 | HRGMv2_1504_5_57 | 68730 | 69374 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_1504_5 | HRGMv2_1504_5_58 | 69452 | 70333 | - | 4.A.6.1.19 |
| TC | HRGMv2_1504_5 | HRGMv2_1504_5_59 | 70326 | 71195 | - | 4.A.6.1.11 |
| TC | HRGMv2_1504_5 | HRGMv2_1504_5_60 | 71266 | 71748 | - | 4.A.6.1.11 |
| pfam | HRGMv2_1504_5 | HRGMv2_1504_5_61 | 71792 | 72223 | - | EIIA-man |
| CAZyme | HRGMv2_1504_5 | HRGMv2_1504_5_62 | 72376 | 74190 | - | GH154 |
Gene ID: HRGMv2_1504_5_49
Type: TC
Location: 58966 - 60327 (-)
Type: TC
Location: 58966 - 60327 (-)
Gene ID: HRGMv2_1504_5_50
Type: TF
Location: 60561 - 61247 (+)
Type: TF
Location: 60561 - 61247 (+)
Gene ID: HRGMv2_1504_5_51
Type: CAZyme
Location: 61272 - 62981 (-)
Type: CAZyme
Location: 61272 - 62981 (-)
Gene ID: HRGMv2_1504_5_52
Type: CAZyme
Location: 62984 - 64207 (-)
Type: CAZyme
Location: 62984 - 64207 (-)
Gene ID: HRGMv2_1504_5_53
Type: pfam
Location: 64323 - 65114 (-)
Type: pfam
Location: 64323 - 65114 (-)
Gene ID: HRGMv2_1504_5_54
Type: CAZyme
Location: 65127 - 66758 (-)
Type: CAZyme
Location: 65127 - 66758 (-)
Gene ID: HRGMv2_1504_5_55
Type: pfam
Location: 66762 - 67604 (-)
Type: pfam
Location: 66762 - 67604 (-)
Gene ID: HRGMv2_1504_5_56
Type: CAZyme
Location: 67598 - 68749 (-)
Type: CAZyme
Location: 67598 - 68749 (-)
Gene ID: HRGMv2_1504_5_57
Type:
Location: 68730 - 69374 (-)
Type:
Location: 68730 - 69374 (-)
Gene ID: HRGMv2_1504_5_58
Type: TC
Location: 69452 - 70333 (-)
Type: TC
Location: 69452 - 70333 (-)
Gene ID: HRGMv2_1504_5_59
Type: TC
Location: 70326 - 71195 (-)
Type: TC
Location: 70326 - 71195 (-)
Gene ID: HRGMv2_1504_5_60
Type: TC
Location: 71266 - 71748 (-)
Type: TC
Location: 71266 - 71748 (-)
Gene ID: HRGMv2_1504_5_61
Type: pfam
Location: 71792 - 72223 (-)
Type: pfam
Location: 71792 - 72223 (-)
Gene ID: HRGMv2_1504_5_62
Type: CAZyme
Location: 72376 - 74190 (-)
Type: CAZyme
Location: 72376 - 74190 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.