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Cluster: HRGMv2_1504_CGC20

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1504_31 HRGMv2_1504_31_4 2717 5167 - 4.A.1.1.8
NULL(UNKNOWN) HRGMv2_1504_31 HRGMv2_1504_31_5 5189 5308 + NULL(UNKNOWN)
[View Structural Homologs]
TF HRGMv2_1504_31 HRGMv2_1504_31_6 5392 6111 + GntR
TC HRGMv2_1504_31 HRGMv2_1504_31_7 6418 7734 + 3.A.1.1.45
TC HRGMv2_1504_31 HRGMv2_1504_31_8 7822 8676 + 3.A.1.1.45
TC HRGMv2_1504_31 HRGMv2_1504_31_9 8676 9515 + 3.A.1.1.45
TC HRGMv2_1504_31 HRGMv2_1504_31_10 9584 10783 + 3.A.1.1.22
CAZyme HRGMv2_1504_31 HRGMv2_1504_31_11 11240 13507 - GT35
CAZyme HRGMv2_1504_31 HRGMv2_1504_31_12 13637 15142 - GH77
Gene ID: HRGMv2_1504_31_4
Type: TC
Location: 2717 - 5167 (-)
Gene ID: HRGMv2_1504_31_5
Type:
Location: 5189 - 5308 (+)
Gene ID: HRGMv2_1504_31_6
Type: TF
Location: 5392 - 6111 (+)
Gene ID: HRGMv2_1504_31_7
Type: TC
Location: 6418 - 7734 (+)
Gene ID: HRGMv2_1504_31_8
Type: TC
Location: 7822 - 8676 (+)
Gene ID: HRGMv2_1504_31_9
Type: TC
Location: 8676 - 9515 (+)
Gene ID: HRGMv2_1504_31_10
Type: TC
Location: 9584 - 10783 (+)
Gene ID: HRGMv2_1504_31_11
Type: CAZyme
Location: 11240 - 13507 (-)
Gene ID: HRGMv2_1504_31_12
Type: CAZyme
Location: 13637 - 15142 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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