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Cluster: HRGMv2_1504_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1504_1 HRGMv2_1504_1_107 134048 135427 - 3.A.1.17.10
pfam HRGMv2_1504_1 HRGMv2_1504_1_108 135431 136489 - NMT1
TC HRGMv2_1504_1 HRGMv2_1504_1_109 136492 138303 - 3.D.1.5.1
STP HRGMv2_1504_1 HRGMv2_1504_1_110 138297 140129 - Pyr_redox_2
CAZyme HRGMv2_1504_1 HRGMv2_1504_1_111 140386 141768 - GH4
TC HRGMv2_1504_1 HRGMv2_1504_1_112 141772 143388 - 4.A.1.1.3
pfam HRGMv2_1504_1 HRGMv2_1504_1_113 143488 144354 - PRD | PRD | CAT_RBD
TC HRGMv2_1504_1 HRGMv2_1504_1_114 144361 144873 - 4.A.1.2.5
TC HRGMv2_1504_1 HRGMv2_1504_1_115 145238 147400 - 1.I.1.1.3
Gene ID: HRGMv2_1504_1_107
Type: TC
Location: 134048 - 135427 (-)
Gene ID: HRGMv2_1504_1_108
Type: pfam
Location: 135431 - 136489 (-)
Gene ID: HRGMv2_1504_1_109
Type: TC
Location: 136492 - 138303 (-)
Gene ID: HRGMv2_1504_1_110
Type: STP
Location: 138297 - 140129 (-)
Gene ID: HRGMv2_1504_1_111
Type: CAZyme
Location: 140386 - 141768 (-)
Gene ID: HRGMv2_1504_1_112
Type: TC
Location: 141772 - 143388 (-)
Gene ID: HRGMv2_1504_1_113
Type: pfam
Location: 143488 - 144354 (-)
Gene ID: HRGMv2_1504_1_114
Type: TC
Location: 144361 - 144873 (-)
Gene ID: HRGMv2_1504_1_115
Type: TC
Location: 145238 - 147400 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1504_1_107 vegan > omnivore 1.15547 0.01287

🧭 Explore Read Mapping of CGC

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