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Cluster: HRGMv2_1498_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1498_12 HRGMv2_1498_12_1 3 851 - 4.A.3.1.1
TF HRGMv2_1498_12 HRGMv2_1498_12_2 1136 2137 + LacI
pfam HRGMv2_1498_12 HRGMv2_1498_12_3 2493 3611 - Transposase_mut
TC HRGMv2_1498_12 HRGMv2_1498_12_4 3833 5593 - 4.A.3.1.1
CAZyme HRGMv2_1498_12 HRGMv2_1498_12_5 5770 7212 - GH1
TF HRGMv2_1498_12 HRGMv2_1498_12_6 7554 8591 + LacI
CAZyme HRGMv2_1498_12 HRGMv2_1498_12_7 8861 10300 - GH1
TC HRGMv2_1498_12 HRGMv2_1498_12_8 10367 12139 - 4.A.3.1.1
TF HRGMv2_1498_12 HRGMv2_1498_12_9 12496 13500 + LacI
TC HRGMv2_1498_12 HRGMv2_1498_12_10 13715 14053 + 4.A.3.1.2
Gene ID: HRGMv2_1498_12_1
Type: TC
Location: 3 - 851 (-)
Gene ID: HRGMv2_1498_12_2
Type: TF
Location: 1136 - 2137 (+)
Gene ID: HRGMv2_1498_12_3
Type: pfam
Location: 2493 - 3611 (-)
Gene ID: HRGMv2_1498_12_4
Type: TC
Location: 3833 - 5593 (-)
Gene ID: HRGMv2_1498_12_5
Type: CAZyme
Location: 5770 - 7212 (-)
Gene ID: HRGMv2_1498_12_6
Type: TF
Location: 7554 - 8591 (+)
Gene ID: HRGMv2_1498_12_7
Type: CAZyme
Location: 8861 - 10300 (-)
Gene ID: HRGMv2_1498_12_8
Type: TC
Location: 10367 - 12139 (-)
Gene ID: HRGMv2_1498_12_9
Type: TF
Location: 12496 - 13500 (+)
Gene ID: HRGMv2_1498_12_10
Type: TC
Location: 13715 - 14053 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1498_12_6 vegetarian > omnivore 1.02591 0.01890

🧭 Explore Read Mapping of CGC

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