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Cluster: HRGMv2_1498_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1498_10 HRGMv2_1498_10_2 1694 2461 - 1.A.23.4.10
pfam HRGMv2_1498_10 HRGMv2_1498_10_3 2590 4656 - Metallophos | 5_nucleotid_C
TC HRGMv2_1498_10 HRGMv2_1498_10_4 4693 5487 - 3.A.1.34.1
TC HRGMv2_1498_10 HRGMv2_1498_10_5 5480 6403 - 3.A.1.34.1
TC HRGMv2_1498_10 HRGMv2_1498_10_6 6608 7588 - 3.A.1.34.1
NULL(UNKNOWN) HRGMv2_1498_10 HRGMv2_1498_10_7 7749 8534 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_1498_10 HRGMv2_1498_10_8 8784 10187 - tRNA-synt_2 | tRNA_anti-codon
TC HRGMv2_1498_10 HRGMv2_1498_10_9 10369 10932 - 4.A.1.2.6
peptidase HRGMv2_1498_10 HRGMv2_1498_10_10 11178 12080 + S09.UPW
TC HRGMv2_1498_10 HRGMv2_1498_10_11 12461 14821 + 9.A.8.1.6
TC HRGMv2_1498_10 HRGMv2_1498_10_12 14942 16138 + 2.A.1.2.18
CAZyme HRGMv2_1498_10 HRGMv2_1498_10_13 16292 17668 + GH13_20
Gene ID: HRGMv2_1498_10_2
Type: TC
Location: 1694 - 2461 (-)
Gene ID: HRGMv2_1498_10_3
Type: pfam
Location: 2590 - 4656 (-)
Gene ID: HRGMv2_1498_10_4
Type: TC
Location: 4693 - 5487 (-)
Gene ID: HRGMv2_1498_10_5
Type: TC
Location: 5480 - 6403 (-)
Gene ID: HRGMv2_1498_10_6
Type: TC
Location: 6608 - 7588 (-)
Gene ID: HRGMv2_1498_10_7
Type:
Location: 7749 - 8534 (-)
Gene ID: HRGMv2_1498_10_8
Type: pfam
Location: 8784 - 10187 (-)
Gene ID: HRGMv2_1498_10_9
Type: TC
Location: 10369 - 10932 (-)
Gene ID: HRGMv2_1498_10_10
Type: peptidase
Location: 11178 - 12080 (+)
Gene ID: HRGMv2_1498_10_11
Type: TC
Location: 12461 - 14821 (+)
Gene ID: HRGMv2_1498_10_12
Type: TC
Location: 14942 - 16138 (+)
Gene ID: HRGMv2_1498_10_13
Type: CAZyme
Location: 16292 - 17668 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1498_10_3 vegan > omnivore 1.94668 0.01033
HRGMv2_1498_10_3 vegetarian > omnivore 1.43732 0.01878

🧭 Explore Read Mapping of CGC

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