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Cluster: HRGMv2_1488_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1488_14 HRGMv2_1488_14_38 47220 47888 + 9.B.18.1.3
CAZyme HRGMv2_1488_14 HRGMv2_1488_14_39 47889 48737 + GT2
CAZyme HRGMv2_1488_14 HRGMv2_1488_14_40 48838 49902 + GT4
CAZyme HRGMv2_1488_14 HRGMv2_1488_14_41 49895 51028 + GT4
NULL(UNKNOWN) HRGMv2_1488_14 HRGMv2_1488_14_42 51047 52303 + NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_1488_14 HRGMv2_1488_14_43 52296 52961 + DUF1919
CAZyme HRGMv2_1488_14 HRGMv2_1488_14_44 53084 53746 + GT32
NULL(UNKNOWN) HRGMv2_1488_14 HRGMv2_1488_14_45 53920 54153 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_1488_14 HRGMv2_1488_14_46 55197 56618 + 2.A.66.2.16
Gene ID: HRGMv2_1488_14_38
Type: TC
Location: 47220 - 47888 (+)
Gene ID: HRGMv2_1488_14_39
Type: CAZyme
Location: 47889 - 48737 (+)
Gene ID: HRGMv2_1488_14_40
Type: CAZyme
Location: 48838 - 49902 (+)
Gene ID: HRGMv2_1488_14_41
Type: CAZyme
Location: 49895 - 51028 (+)
Gene ID: HRGMv2_1488_14_42
Type:
Location: 51047 - 52303 (+)
Gene ID: HRGMv2_1488_14_43
Type: pfam
Location: 52296 - 52961 (+)
Gene ID: HRGMv2_1488_14_44
Type: CAZyme
Location: 53084 - 53746 (+)
Gene ID: HRGMv2_1488_14_45
Type:
Location: 53920 - 54153 (-)
Gene ID: HRGMv2_1488_14_46
Type: TC
Location: 55197 - 56618 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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