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Cluster: HRGMv2_1486_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1486_6 HRGMv2_1486_6_14 17019 17687 - 3.A.1.103.5
CAZyme HRGMv2_1486_6 HRGMv2_1486_6_15 17810 18772 + GT81
CAZyme HRGMv2_1486_6 HRGMv2_1486_6_16 18800 19747 + GT2
TC HRGMv2_1486_6 HRGMv2_1486_6_17 19731 22142 + 9.B.144.1.5
NULL(UNKNOWN) HRGMv2_1486_6 HRGMv2_1486_6_18 22483 22641 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_1486_6 HRGMv2_1486_6_19 22758 23993 - GT4
CAZyme HRGMv2_1486_6 HRGMv2_1486_6_20 24015 25073 - GT2
CAZyme HRGMv2_1486_6 HRGMv2_1486_6_21 25082 26197 - GT2
TC HRGMv2_1486_6 HRGMv2_1486_6_22 26199 26954 - 3.A.1.103.1
TC HRGMv2_1486_6 HRGMv2_1486_6_23 26964 27776 - 3.A.1.103.4
CAZyme HRGMv2_1486_6 HRGMv2_1486_6_24 27934 29070 - GT2
CAZyme HRGMv2_1486_6 HRGMv2_1486_6_25 29266 31257 + GT2
Gene ID: HRGMv2_1486_6_14
Type: TC
Location: 17019 - 17687 (-)
Gene ID: HRGMv2_1486_6_15
Type: CAZyme
Location: 17810 - 18772 (+)
Gene ID: HRGMv2_1486_6_16
Type: CAZyme
Location: 18800 - 19747 (+)
Gene ID: HRGMv2_1486_6_17
Type: TC
Location: 19731 - 22142 (+)
Gene ID: HRGMv2_1486_6_18
Type:
Location: 22483 - 22641 (+)
Gene ID: HRGMv2_1486_6_19
Type: CAZyme
Location: 22758 - 23993 (-)
Gene ID: HRGMv2_1486_6_20
Type: CAZyme
Location: 24015 - 25073 (-)
Gene ID: HRGMv2_1486_6_21
Type: CAZyme
Location: 25082 - 26197 (-)
Gene ID: HRGMv2_1486_6_22
Type: TC
Location: 26199 - 26954 (-)
Gene ID: HRGMv2_1486_6_23
Type: TC
Location: 26964 - 27776 (-)
Gene ID: HRGMv2_1486_6_24
Type: CAZyme
Location: 27934 - 29070 (-)
Gene ID: HRGMv2_1486_6_25
Type: CAZyme
Location: 29266 - 31257 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1486_6_19 vegetarian > vegan 3.43201 0.04270
HRGMv2_1486_6_20 vegetarian > vegan 3.85796 0.01542
HRGMv2_1486_6_24 vegetarian > vegan 2.41610 0.04270

🧭 Explore Read Mapping of CGC

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