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Cluster: HRGMv2_1474_CGC14

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1474_133 HRGMv2_1474_133_1 190 1548 - 2.A.33.1.1
pfam HRGMv2_1474_133 HRGMv2_1474_133_2 1817 2740 - DHH | DHHA2
STP HRGMv2_1474_133 HRGMv2_1474_133_3 2860 3813 - Glucokinase
TC HRGMv2_1474_133 HRGMv2_1474_133_4 4055 4387 - 4.A.3.2.3
TC HRGMv2_1474_133 HRGMv2_1474_133_5 4397 4699 - 4.A.3.2.9
TC HRGMv2_1474_133 HRGMv2_1474_133_6 4861 6204 - 4.A.3.2.2
CAZyme HRGMv2_1474_133 HRGMv2_1474_133_7 6325 7725 - GH1
Gene ID: HRGMv2_1474_133_1
Type: TC
Location: 190 - 1548 (-)
Gene ID: HRGMv2_1474_133_2
Type: pfam
Location: 1817 - 2740 (-)
Gene ID: HRGMv2_1474_133_3
Type: STP
Location: 2860 - 3813 (-)
Gene ID: HRGMv2_1474_133_4
Type: TC
Location: 4055 - 4387 (-)
Gene ID: HRGMv2_1474_133_5
Type: TC
Location: 4397 - 4699 (-)
Gene ID: HRGMv2_1474_133_6
Type: TC
Location: 4861 - 6204 (-)
Gene ID: HRGMv2_1474_133_7
Type: CAZyme
Location: 6325 - 7725 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1474_133_5 vegan > omnivore 1.05628 0.00566

🧭 Explore Read Mapping of CGC

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