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Cluster: HRGMv2_1438_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1438_30 HRGMv2_1438_30_20 17381 18550 - CE9
STP HRGMv2_1438_30 HRGMv2_1438_30_21 18668 19834 - SIS | SIS
TF HRGMv2_1438_30 HRGMv2_1438_30_22 19949 20680 - GntR
TC HRGMv2_1438_30 HRGMv2_1438_30_23 20866 21948 - 4.A.6.1.4
TC HRGMv2_1438_30 HRGMv2_1438_30_24 21938 22738 - 4.A.6.1.4
TC HRGMv2_1438_30 HRGMv2_1438_30_25 22829 23311 - 4.A.6.1.4
pfam HRGMv2_1438_30 HRGMv2_1438_30_26 23348 23629 - YajC
TC HRGMv2_1438_30 HRGMv2_1438_30_27 23629 24072 - 4.A.6.1.16
Gene ID: HRGMv2_1438_30_20
Type: CAZyme
Location: 17381 - 18550 (-)
Gene ID: HRGMv2_1438_30_21
Type: STP
Location: 18668 - 19834 (-)
Gene ID: HRGMv2_1438_30_22
Type: TF
Location: 19949 - 20680 (-)
Gene ID: HRGMv2_1438_30_23
Type: TC
Location: 20866 - 21948 (-)
Gene ID: HRGMv2_1438_30_24
Type: TC
Location: 21938 - 22738 (-)
Gene ID: HRGMv2_1438_30_25
Type: TC
Location: 22829 - 23311 (-)
Gene ID: HRGMv2_1438_30_26
Type: pfam
Location: 23348 - 23629 (-)
Gene ID: HRGMv2_1438_30_27
Type: TC
Location: 23629 - 24072 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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