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Cluster: HRGMv2_1056_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1056_5 HRGMv2_1056_5_53 57842 59269 - GH140
CAZyme HRGMv2_1056_5 HRGMv2_1056_5_54 59339 60583 - GH1
pfam HRGMv2_1056_5 HRGMv2_1056_5_55 60676 61431 - YdjC
TF HRGMv2_1056_5 HRGMv2_1056_5_56 61662 63560 + HTH_11
CAZyme HRGMv2_1056_5 HRGMv2_1056_5_57 63576 64988 + GH1
pfam HRGMv2_1056_5 HRGMv2_1056_5_58 65085 65444 + PTS_IIA
TC HRGMv2_1056_5 HRGMv2_1056_5_59 65699 66961 - 4.A.3.2.2
TC HRGMv2_1056_5 HRGMv2_1056_5_60 66976 67281 - 4.A.3.2.6
Gene ID: HRGMv2_1056_5_53
Type: CAZyme
Location: 57842 - 59269 (-)
Gene ID: HRGMv2_1056_5_54
Type: CAZyme
Location: 59339 - 60583 (-)
Gene ID: HRGMv2_1056_5_55
Type: pfam
Location: 60676 - 61431 (-)
Gene ID: HRGMv2_1056_5_56
Type: TF
Location: 61662 - 63560 (+)
Gene ID: HRGMv2_1056_5_57
Type: CAZyme
Location: 63576 - 64988 (+)
Gene ID: HRGMv2_1056_5_58
Type: pfam
Location: 65085 - 65444 (+)
Gene ID: HRGMv2_1056_5_59
Type: TC
Location: 65699 - 66961 (-)
Gene ID: HRGMv2_1056_5_60
Type: TC
Location: 66976 - 67281 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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