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Cluster: HRGMv2_1056_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1056_5 HRGMv2_1056_5_23 23263 24048 - 3.A.1.3.20
TC HRGMv2_1056_5 HRGMv2_1056_5_24 24071 25219 - 3.A.1.3.20
TC HRGMv2_1056_5 HRGMv2_1056_5_25 25229 26050 - 3.A.1.3.20
pfam HRGMv2_1056_5 HRGMv2_1056_5_26 26134 27027 - Aldose_epim
NULL(UNKNOWN) HRGMv2_1056_5 HRGMv2_1056_5_27 27141 28010 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_1056_5 HRGMv2_1056_5_28 28270 29499 + 2.A.1.2.25
CAZyme HRGMv2_1056_5 HRGMv2_1056_5_29 29743 31068 + GH4
TC HRGMv2_1056_5 HRGMv2_1056_5_30 31093 32673 + 4.A.1.1.14
TF HRGMv2_1056_5 HRGMv2_1056_5_31 32751 33551 + HTH_6
TC HRGMv2_1056_5 HRGMv2_1056_5_32 33744 35306 - 4.A.1.1.3
CAZyme HRGMv2_1056_5 HRGMv2_1056_5_33 35389 36714 - GH4
TF HRGMv2_1056_5 HRGMv2_1056_5_34 37013 37762 + HTH_6
TC HRGMv2_1056_5 HRGMv2_1056_5_35 38588 40126 + 3.A.1.121.3
Gene ID: HRGMv2_1056_5_23
Type: TC
Location: 23263 - 24048 (-)
Gene ID: HRGMv2_1056_5_24
Type: TC
Location: 24071 - 25219 (-)
Gene ID: HRGMv2_1056_5_25
Type: TC
Location: 25229 - 26050 (-)
Gene ID: HRGMv2_1056_5_26
Type: pfam
Location: 26134 - 27027 (-)
Gene ID: HRGMv2_1056_5_27
Type:
Location: 27141 - 28010 (-)
Gene ID: HRGMv2_1056_5_28
Type: TC
Location: 28270 - 29499 (+)
Gene ID: HRGMv2_1056_5_29
Type: CAZyme
Location: 29743 - 31068 (+)
Gene ID: HRGMv2_1056_5_30
Type: TC
Location: 31093 - 32673 (+)
Gene ID: HRGMv2_1056_5_31
Type: TF
Location: 32751 - 33551 (+)
Gene ID: HRGMv2_1056_5_32
Type: TC
Location: 33744 - 35306 (-)
Gene ID: HRGMv2_1056_5_33
Type: CAZyme
Location: 35389 - 36714 (-)
Gene ID: HRGMv2_1056_5_34
Type: TF
Location: 37013 - 37762 (+)
Gene ID: HRGMv2_1056_5_35
Type: TC
Location: 38588 - 40126 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1056_5_23 vegetarian > vegan 1.26277 0.00141

🧭 Explore Read Mapping of CGC

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