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Cluster: HRGMv2_1040_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1040_27 HRGMv2_1040_27_20 22822 24246 + 4.A.1.2.3
NULL(UNKNOWN) HRGMv2_1040_27 HRGMv2_1040_27_21 24323 25540 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_1040_27 HRGMv2_1040_27_22 25549 26460 + 2.A.69.4.3
pfam HRGMv2_1040_27 HRGMv2_1040_27_23 26644 28155 - Sde182_NH-like
peptidase HRGMv2_1040_27 HRGMv2_1040_27_24 28419 29756 - S09.UPW
TC HRGMv2_1040_27 HRGMv2_1040_27_25 30247 31674 + 4.A.1.2.11
CAZyme HRGMv2_1040_27 HRGMv2_1040_27_26 31885 33198 + GH140
Gene ID: HRGMv2_1040_27_20
Type: TC
Location: 22822 - 24246 (+)
Gene ID: HRGMv2_1040_27_21
Type:
Location: 24323 - 25540 (+)
Gene ID: HRGMv2_1040_27_22
Type: TC
Location: 25549 - 26460 (+)
Gene ID: HRGMv2_1040_27_23
Type: pfam
Location: 26644 - 28155 (-)
Gene ID: HRGMv2_1040_27_24
Type: peptidase
Location: 28419 - 29756 (-)
Gene ID: HRGMv2_1040_27_25
Type: TC
Location: 30247 - 31674 (+)
Gene ID: HRGMv2_1040_27_26
Type: CAZyme
Location: 31885 - 33198 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1040_27_24 vegetarian > vegan 1.06999 0.01282

🧭 Explore Read Mapping of CGC

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