Cluster: HRGMv2_1030_CGC4
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_1030
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1030_4 | HRGMv2_1030_4_27 | 27338 | 27874 | - | 4.A.1.2.6 |
| CAZyme | HRGMv2_1030_4 | HRGMv2_1030_4_28 | 28015 | 29463 | - | GH1 |
| TF | HRGMv2_1030_4 | HRGMv2_1030_4_29 | 29636 | 30643 | - | HTH_AraC |
| CAZyme | HRGMv2_1030_4 | HRGMv2_1030_4_30 | 30760 | 33366 | + | GH106 |
| TF | HRGMv2_1030_4 | HRGMv2_1030_4_31 | 33409 | 34263 | + | HTH_6 |
| STP | HRGMv2_1030_4 | HRGMv2_1030_4_32 | 34781 | 35464 | - | Pribosyltran |
| TC | HRGMv2_1030_4 | HRGMv2_1030_4_33 | 35902 | 38670 | + | 3.A.3.4.1 |
Gene ID: HRGMv2_1030_4_27
Type: TC
Location: 27338 - 27874 (-)
Type: TC
Location: 27338 - 27874 (-)
Gene ID: HRGMv2_1030_4_28
Type: CAZyme
Location: 28015 - 29463 (-)
Type: CAZyme
Location: 28015 - 29463 (-)
Gene ID: HRGMv2_1030_4_29
Type: TF
Location: 29636 - 30643 (-)
Type: TF
Location: 29636 - 30643 (-)
Gene ID: HRGMv2_1030_4_30
Type: CAZyme
Location: 30760 - 33366 (+)
Type: CAZyme
Location: 30760 - 33366 (+)
Gene ID: HRGMv2_1030_4_31
Type: TF
Location: 33409 - 34263 (+)
Type: TF
Location: 33409 - 34263 (+)
Gene ID: HRGMv2_1030_4_32
Type: STP
Location: 34781 - 35464 (-)
Type: STP
Location: 34781 - 35464 (-)
Gene ID: HRGMv2_1030_4_33
Type: TC
Location: 35902 - 38670 (+)
Type: TC
Location: 35902 - 38670 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.