dbCAN Logo

Cluster: HRGMv2_1030_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1030_41 HRGMv2_1030_41_2 1351 1689 - 4.A.3.1.2
TF HRGMv2_1030_41 HRGMv2_1030_41_3 1904 2908 - LacI
TC HRGMv2_1030_41 HRGMv2_1030_41_4 3265 5037 + 4.A.3.1.1
CAZyme HRGMv2_1030_41 HRGMv2_1030_41_5 5104 6543 + GH1
TF HRGMv2_1030_41 HRGMv2_1030_41_6 6805 7842 - LacI
CAZyme HRGMv2_1030_41 HRGMv2_1030_41_7 8184 9626 + GH1
TC HRGMv2_1030_41 HRGMv2_1030_41_8 9803 11563 + 4.A.3.1.1
TF HRGMv2_1030_41 HRGMv2_1030_41_9 11821 12831 - LacI
TC HRGMv2_1030_41 HRGMv2_1030_41_10 13108 14871 + 4.A.3.1.1
CAZyme HRGMv2_1030_41 HRGMv2_1030_41_11 14947 16368 + GH1
Gene ID: HRGMv2_1030_41_2
Type: TC
Location: 1351 - 1689 (-)
Gene ID: HRGMv2_1030_41_3
Type: TF
Location: 1904 - 2908 (-)
Gene ID: HRGMv2_1030_41_4
Type: TC
Location: 3265 - 5037 (+)
Gene ID: HRGMv2_1030_41_5
Type: CAZyme
Location: 5104 - 6543 (+)
Gene ID: HRGMv2_1030_41_6
Type: TF
Location: 6805 - 7842 (-)
Gene ID: HRGMv2_1030_41_7
Type: CAZyme
Location: 8184 - 9626 (+)
Gene ID: HRGMv2_1030_41_8
Type: TC
Location: 9803 - 11563 (+)
Gene ID: HRGMv2_1030_41_9
Type: TF
Location: 11821 - 12831 (-)
Gene ID: HRGMv2_1030_41_10
Type: TC
Location: 13108 - 14871 (+)
Gene ID: HRGMv2_1030_41_11
Type: CAZyme
Location: 14947 - 16368 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1030_41_6 vegetarian > omnivore 1.04781 0.03181

🧭 Explore Read Mapping of CGC

← Back to Cluster List