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Cluster: HRGMv2_1030_CGC15

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1030_23 HRGMv2_1030_23_14 16907 18289 - GH4
TC HRGMv2_1030_23 HRGMv2_1030_23_15 18293 19909 - 4.A.1.1.3
pfam HRGMv2_1030_23 HRGMv2_1030_23_16 20009 20875 - PRD | PRD | CAT_RBD
TC HRGMv2_1030_23 HRGMv2_1030_23_17 20882 21394 - 4.A.1.2.5
STP HRGMv2_1030_23 HRGMv2_1030_23_18 21738 22499 - Fer4
TC HRGMv2_1030_23 HRGMv2_1030_23_19 23124 25376 - 1.I.1.1.3
STP HRGMv2_1030_23 HRGMv2_1030_23_20 25977 26939 + FHA
STP HRGMv2_1030_23 HRGMv2_1030_23_21 27111 29195 + Pkinase
TC HRGMv2_1030_23 HRGMv2_1030_23_22 29610 31952 + 3.A.3.5.15
Gene ID: HRGMv2_1030_23_14
Type: CAZyme
Location: 16907 - 18289 (-)
Gene ID: HRGMv2_1030_23_15
Type: TC
Location: 18293 - 19909 (-)
Gene ID: HRGMv2_1030_23_16
Type: pfam
Location: 20009 - 20875 (-)
Gene ID: HRGMv2_1030_23_17
Type: TC
Location: 20882 - 21394 (-)
Gene ID: HRGMv2_1030_23_18
Type: STP
Location: 21738 - 22499 (-)
Gene ID: HRGMv2_1030_23_19
Type: TC
Location: 23124 - 25376 (-)
Gene ID: HRGMv2_1030_23_20
Type: STP
Location: 25977 - 26939 (+)
Gene ID: HRGMv2_1030_23_21
Type: STP
Location: 27111 - 29195 (+)
Gene ID: HRGMv2_1030_23_22
Type: TC
Location: 29610 - 31952 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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