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Cluster: HRGMv2_1030_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1030_14 HRGMv2_1030_14_29 28267 28710 + 4.A.6.1.16
pfam HRGMv2_1030_14 HRGMv2_1030_14_30 28710 28991 + YajC
TC HRGMv2_1030_14 HRGMv2_1030_14_31 29028 29510 + 4.A.6.1.4
TC HRGMv2_1030_14 HRGMv2_1030_14_32 29601 30401 + 4.A.6.1.4
TC HRGMv2_1030_14 HRGMv2_1030_14_33 30391 31473 + 4.A.6.1.4
TF HRGMv2_1030_14 HRGMv2_1030_14_34 31658 32389 + GntR
STP HRGMv2_1030_14 HRGMv2_1030_14_35 32504 33670 + SIS | SIS
CAZyme HRGMv2_1030_14 HRGMv2_1030_14_36 33789 34958 + CE9
Gene ID: HRGMv2_1030_14_29
Type: TC
Location: 28267 - 28710 (+)
Gene ID: HRGMv2_1030_14_30
Type: pfam
Location: 28710 - 28991 (+)
Gene ID: HRGMv2_1030_14_31
Type: TC
Location: 29028 - 29510 (+)
Gene ID: HRGMv2_1030_14_32
Type: TC
Location: 29601 - 30401 (+)
Gene ID: HRGMv2_1030_14_33
Type: TC
Location: 30391 - 31473 (+)
Gene ID: HRGMv2_1030_14_34
Type: TF
Location: 31658 - 32389 (+)
Gene ID: HRGMv2_1030_14_35
Type: STP
Location: 32504 - 33670 (+)
Gene ID: HRGMv2_1030_14_36
Type: CAZyme
Location: 33789 - 34958 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1030_14_30 vegan > omnivore 1.18365 0.00701

🧭 Explore Read Mapping of CGC

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