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Cluster: HRGMv2_1030_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1030_10 HRGMv2_1030_10_27 27186 28616 - 2.A.66.2.23
NULL(UNKNOWN) HRGMv2_1030_10 HRGMv2_1030_10_28 29117 30019 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_1030_10 HRGMv2_1030_10_29 30027 30977 - GT2
NULL(UNKNOWN) HRGMv2_1030_10 HRGMv2_1030_10_30 30979 32037 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_1030_10 HRGMv2_1030_10_31 32256 33176 - GT2
CAZyme HRGMv2_1030_10 HRGMv2_1030_10_32 33173 33931 - GT32
CAZyme HRGMv2_1030_10 HRGMv2_1030_10_33 33912 34991 - GT4
pfam HRGMv2_1030_10 HRGMv2_1030_10_34 34988 36094 - Glycos_transf_1 | Glyco_trans_1_4
pfam HRGMv2_1030_10 HRGMv2_1030_10_35 36087 37202 - Epimerase_2
CAZyme HRGMv2_1030_10 HRGMv2_1030_10_36 37195 38001 - GT26
TC HRGMv2_1030_10 HRGMv2_1030_10_37 37988 38737 - 9.B.18.1.2
Gene ID: HRGMv2_1030_10_27
Type: TC
Location: 27186 - 28616 (-)
Gene ID: HRGMv2_1030_10_28
Type:
Location: 29117 - 30019 (-)
Gene ID: HRGMv2_1030_10_29
Type: CAZyme
Location: 30027 - 30977 (-)
Gene ID: HRGMv2_1030_10_30
Type:
Location: 30979 - 32037 (-)
Gene ID: HRGMv2_1030_10_31
Type: CAZyme
Location: 32256 - 33176 (-)
Gene ID: HRGMv2_1030_10_32
Type: CAZyme
Location: 33173 - 33931 (-)
Gene ID: HRGMv2_1030_10_33
Type: CAZyme
Location: 33912 - 34991 (-)
Gene ID: HRGMv2_1030_10_34
Type: pfam
Location: 34988 - 36094 (-)
Gene ID: HRGMv2_1030_10_35
Type: pfam
Location: 36087 - 37202 (-)
Gene ID: HRGMv2_1030_10_36
Type: CAZyme
Location: 37195 - 38001 (-)
Gene ID: HRGMv2_1030_10_37
Type: TC
Location: 37988 - 38737 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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