Cluster: HRGMv2_1029_CGC8
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1029
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1029_13 | HRGMv2_1029_13_18 | 16505 | 18301 | - | 3.A.1.135.6 |
| TC | HRGMv2_1029_13 | HRGMv2_1029_13_19 | 18294 | 20063 | - | 3.A.1.135.6 |
| TF | HRGMv2_1029_13 | HRGMv2_1029_13_20 | 20191 | 20658 | - | MarR |
| TC | HRGMv2_1029_13 | HRGMv2_1029_13_21 | 20917 | 22596 | + | 3.A.1.120.6 |
| TF | HRGMv2_1029_13 | HRGMv2_1029_13_22 | 22684 | 23400 | - | GntR |
| TC | HRGMv2_1029_13 | HRGMv2_1029_13_23 | 23633 | 25108 | + | 4.A.1.2.13 |
| CAZyme | HRGMv2_1029_13 | HRGMv2_1029_13_24 | 25208 | 26926 | + | GH13_29 |
Gene ID: HRGMv2_1029_13_18
Type: TC
Location: 16505 - 18301 (-)
Type: TC
Location: 16505 - 18301 (-)
Gene ID: HRGMv2_1029_13_19
Type: TC
Location: 18294 - 20063 (-)
Type: TC
Location: 18294 - 20063 (-)
Gene ID: HRGMv2_1029_13_20
Type: TF
Location: 20191 - 20658 (-)
Type: TF
Location: 20191 - 20658 (-)
Gene ID: HRGMv2_1029_13_21
Type: TC
Location: 20917 - 22596 (+)
Type: TC
Location: 20917 - 22596 (+)
Gene ID: HRGMv2_1029_13_22
Type: TF
Location: 22684 - 23400 (-)
Type: TF
Location: 22684 - 23400 (-)
Gene ID: HRGMv2_1029_13_23
Type: TC
Location: 23633 - 25108 (+)
Type: TC
Location: 23633 - 25108 (+)
Gene ID: HRGMv2_1029_13_24
Type: CAZyme
Location: 25208 - 26926 (+)
Type: CAZyme
Location: 25208 - 26926 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.