Cluster: HRGMv2_1029_CGC4
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_1029
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1029_8 | HRGMv2_1029_8_6 | 6069 | 7136 | - | GT4 |
| pfam | HRGMv2_1029_8 | HRGMv2_1029_8_7 | 7129 | 7656 | - | Hexapep | Hexapep_2 |
| pfam | HRGMv2_1029_8 | HRGMv2_1029_8_8 | 7661 | 8875 | - | Epimerase | Polysacc_synt_C |
| TC | HRGMv2_1029_8 | HRGMv2_1029_8_9 | 8877 | 9935 | - | 9.B.18.2.1 |
| CAZyme | HRGMv2_1029_8 | HRGMv2_1029_8_10 | 9936 | 10712 | - | GT26 |
| TC | HRGMv2_1029_8 | HRGMv2_1029_8_11 | 10712 | 11461 | - | 9.B.18.1.2 |
Gene ID: HRGMv2_1029_8_6
Type: CAZyme
Location: 6069 - 7136 (-)
Type: CAZyme
Location: 6069 - 7136 (-)
Gene ID: HRGMv2_1029_8_7
Type: pfam
Location: 7129 - 7656 (-)
Type: pfam
Location: 7129 - 7656 (-)
Gene ID: HRGMv2_1029_8_8
Type: pfam
Location: 7661 - 8875 (-)
Type: pfam
Location: 7661 - 8875 (-)
Gene ID: HRGMv2_1029_8_9
Type: TC
Location: 8877 - 9935 (-)
Type: TC
Location: 8877 - 9935 (-)
Gene ID: HRGMv2_1029_8_10
Type: CAZyme
Location: 9936 - 10712 (-)
Type: CAZyme
Location: 9936 - 10712 (-)
Gene ID: HRGMv2_1029_8_11
Type: TC
Location: 10712 - 11461 (-)
Type: TC
Location: 10712 - 11461 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1029_8_8 | vegetarian > omnivore | 1.45715 | 0.03331 |
| HRGMv2_1029_8_8 | vegetarian > vegan | 1.55113 | 0.01287 |