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Cluster: HRGMv2_1029_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1029_15 HRGMv2_1029_15_3 2425 2991 + 4.A.1.2.5
pfam HRGMv2_1029_15 HRGMv2_1029_15_4 2998 3864 + PRD | PRD | CAT_RBD
TC HRGMv2_1029_15 HRGMv2_1029_15_5 3964 5580 + 4.A.1.1.3
CAZyme HRGMv2_1029_15 HRGMv2_1029_15_6 5584 6966 + GH4
STP HRGMv2_1029_15 HRGMv2_1029_15_7 7292 9124 + Pyr_redox_2
TC HRGMv2_1029_15 HRGMv2_1029_15_8 9118 10929 + 3.D.1.5.1
pfam HRGMv2_1029_15 HRGMv2_1029_15_9 10932 11966 + NMT1
TC HRGMv2_1029_15 HRGMv2_1029_15_10 11970 13349 + 3.A.1.17.10
Gene ID: HRGMv2_1029_15_3
Type: TC
Location: 2425 - 2991 (+)
Gene ID: HRGMv2_1029_15_4
Type: pfam
Location: 2998 - 3864 (+)
Gene ID: HRGMv2_1029_15_5
Type: TC
Location: 3964 - 5580 (+)
Gene ID: HRGMv2_1029_15_6
Type: CAZyme
Location: 5584 - 6966 (+)
Gene ID: HRGMv2_1029_15_7
Type: STP
Location: 7292 - 9124 (+)
Gene ID: HRGMv2_1029_15_8
Type: TC
Location: 9118 - 10929 (+)
Gene ID: HRGMv2_1029_15_9
Type: pfam
Location: 10932 - 11966 (+)
Gene ID: HRGMv2_1029_15_10
Type: TC
Location: 11970 - 13349 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1029_15_9 vegan > omnivore 1.10036 0.01287
HRGMv2_1029_15_10 vegan > omnivore 1.34360 0.01287

🧭 Explore Read Mapping of CGC

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